SCN Proteipedia

Hg_chrom5_TN10mRNA_9716

Organism: Heterodera glycines Gene Locus: chr5:4281935-4286628 Feature type: polypeptide

Protein Sequence

Length: 632

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.865	0.846	0.863	0.436	1.16	1.785	0.772	1.187	1.16	0.984	1.223	1.21	1.231	1.156	0.807	1.379	0.674	0.743	1.095	0.884	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9142	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.961

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|lysosome_vacuole	—	—	—	—	—	—	—	—	0.000	—	—	0.147	0.149	0.012	0.729	0.289	0.735	0.583	0.012	0.363	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002203	2.000	2.000	Hsc_gene_20156.t1;Hsc_gene_20156.t2	Hsc_gene_20156.t1;Hsc_gene_20156.t2	—	Q8I4E2.1 Sorting nexin lst-4 [Caenorhabditis elegans]	KAI1726339.1 WASP-binding domain of sorting nexin protein domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0035091	GO:0005575_0.936\|GO:0110165_0.934\|GO:0008150_0.859\|GO:0005622_0.840\|GO:0016020_0.839\|GO:0009987_0.819\|GO:0003674_0.730\|GO:0005737_0.728\|GO:0043226_0.722\|GO:0005488_0.689\|GO:0043229_0.687\|GO:0043227_0.658\|GO:0016043_0.640\|GO:0071840_0.640\|GO:0043231_0.629\|GO:0051179_0.606\|GO:0065007_0.575\|GO:0051234_0.573\|GO:0006810_0.571\|GO:0050789_0.557\|GO:0006996_0.549\|GO:0050794_0.537\|GO:0071944_0.529	IPR001452+3-65_6-16_6-64_9-62_21-36_51-63+\|IPR001683+282-392_286-395_317-390+\|IPR019497+393-629+\|IPR027267+441-630+\|IPR036028+5-67+\|IPR036871+268-398_282-393+	SM00312+282-392+\|SM00326+6-64+	PF00787+317-390+PX_domain\|PF07653+9-62+Variant_SH3_domain\|PF10456+393-629+WASP-binding_domain_of_Sorting_nexin_protein	G3DSA:3.30.1520.10:FF:000004+265-398+Sorting_nexin	PTHR45827+6-629+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	71-229	2.000	1-70;230-632	9r4w_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.815	70663.870	7.915	9.500	26.108	11.234	50.475	49.525	14.399	11.709	48.259

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	1619.325	2628.273	2351.231	1483.646	1155.220	1548.344	3243.596	2530.979	814.538	870.660	846.608

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.391	-0.962	-0.555	-0.392	0.437	1.078	0.605	0.501	—	—	—	—	—

No JSON data available for plots.

Back to Browser