Hg_chrom5_TN10mRNA_9718
Organism: Heterodera glycines Gene Locus: chr5:4288450-4293210 Feature type: polypeptideProtein Sequence
Length: 861
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.918 | 1.188 | 0.929 | 0.921 | 1.181 | 0.864 | 0.567 | 1.51 | 1.11 | 1.256 | 0.651 | 1.298 | 1.258 | 1.139 | 1.067 | 1.361 | 1.009 | 0.88 | 0.893 | 0.547 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9143
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-22
|
0.973
|
1.000
|
1.000
|
1.000
|
0.213
|
0.052
|
0.008
|
0.289
|
0.236
|
0.493
|
0.415
|
0.048
|
0.762
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004085
|
2.000
|
1.000
|
Hsc_gene_20157.t1
|
Hsc_gene_20157.t1
|
— |
Q9NA64.1 Interleukin cytokine receptor-related protein 1 [Caenorhabditis elegans]
|
KAI1732818.1 SEFIR domain-containing protein [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030368
|
GO:0008150_0.964|GO:0005575_0.933|GO:0110165_0.930|GO:0065007_0.891|GO:0016020_0.878|GO:0071944_0.874|GO:0050789_0.873|GO:0005886_0.863|GO:0050896_0.848|GO:0048518_0.762|GO:0009628_0.704|GO:0040011_0.685|GO:0040012_0.678|GO:0040017_0.677|GO:0070482_0.674|GO:0032991_0.615|GO:0098796_0.563|GO:0098797_0.554|GO:0043235_0.550
|
IPR013568+503-647_505-645+|IPR038683+48-208+|IPR039465+88-723+
|
— |
PF08357+505-645+SEFIR_domain
|
— |
PTHR15583+88-723+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
707-861
|
1.000
|
1-706
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
95608.210
|
5.829
|
-10.000
|
24.739
|
10.569
|
48.897
|
51.103
|
12.544
|
12.195
|
52.962
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
2497.101
|
3188.022
|
3156.495
|
1987.219
|
1682.566
|
1819.028
|
1852.809
|
2510.170
|
3914.053
|
1915.660
|
2772.114
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.242
|
-0.819
|
-0.560
|
-0.272
|
— | — |
0.363
|
-0.297
|
— | — | — | — | — |