Hg_chrom5_TN10mRNA_9719
Organism: Heterodera glycines Gene Locus: chr5:4288470-4293210 Feature type: polypeptideProtein Sequence
Length: 839
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.929 | 1.136 | 0.867 | 0.945 | 1.112 | 0.917 | 0.568 | 1.371 | 1.112 | 1.321 | 0.686 | 1.262 | 1.225 | 1.077 | 1.192 | 1.345 | 0.997 | 0.867 | 1.009 | 0.596 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9143
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RKRLQLKISCRTAQRKKGA
|
— | — | — | — |
1-22
|
0.973
|
1.000
|
1.000
|
1.000
|
0.216
|
0.059
|
0.009
|
0.306
|
0.226
|
0.481
|
0.409
|
0.082
|
0.745
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004085
|
2.000
|
1.000
|
Hsc_gene_20157.t1
|
Hsc_gene_20157.t1
|
— |
Q9NA64.1 Interleukin cytokine receptor-related protein 1 [Caenorhabditis elegans]
|
KAI1732818.1 SEFIR domain-containing protein [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030368
|
GO:0008150_0.964|GO:0005575_0.936|GO:0110165_0.936|GO:0065007_0.875|GO:0016020_0.874|GO:0071944_0.869|GO:0050789_0.866|GO:0005886_0.860|GO:0050896_0.836|GO:0048518_0.751|GO:0009628_0.699|GO:0040011_0.683|GO:0040012_0.678|GO:0040017_0.677|GO:0070482_0.674|GO:0032991_0.616|GO:0098796_0.564|GO:0098797_0.554|GO:0043235_0.550
|
IPR013568+503-647_505-645+|IPR038683+46-208+|IPR039465+88-727+
|
— |
PF08357+505-645+SEFIR_domain
|
— |
PTHR15583+88-727+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
707-839
|
1.000
|
1-706
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
93488.290
|
6.671
|
2.500
|
24.553
|
10.489
|
48.510
|
51.490
|
13.111
|
11.442
|
51.967
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
2497.101
|
3188.022
|
3156.495
|
1987.219
|
1682.566
|
1819.028
|
1852.809
|
2510.170
|
3914.053
|
1915.660
|
2772.114
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.242
|
-0.819
|
-0.560
|
-0.272
|
— | — |
0.363
|
-0.297
|
— | — | — | — | — |