Hg_chrom5_TN10mRNA_9725
Organism: Heterodera glycines Gene Locus: chr5:4313452-4314179 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.627 | 1.253 | 0.98 | 0.206 | 0.499 | 1.075 | 1.212 | 1.796 | 1.73 | 0.647 | 0.635 | 2.466 | 1.497 | 0.691 | 1.222 | 1.283 | 1.571 | 0.635 | 0.461 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9148
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.652
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.693
|
0.328
|
0.013
|
0.516
|
0.195
|
0.233
|
0.115
|
0.198
|
0.070
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004087
|
1.000
|
2.000
|
Hsc_gene_16240.t1;Hsc_gene_20162.t1
|
Hsc_gene_16240.t1;Hsc_gene_20162.t1
|
— |
Q5E992.1 Peptidyl-prolyl cis-trans isomerase-like 1 [Bos taurus]
|
PIO62036.1 peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Teladorsagia circumcincta]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755|GO:0006457
|
GO:0005575_0.818|GO:0110165_0.780|GO:0005622_0.652|GO:0008150_0.634|GO:0016020_0.631|GO:0043226_0.595|GO:0043229_0.580|GO:0003674_0.572|GO:0043227_0.567|GO:0043231_0.546
|
IPR002130+9-157_10-159_22-37_48-60_91-106_106-118_119-134+|IPR020892+43-60+|IPR024936+1-163+|IPR029000+1-158_8-158+|IPR044666+5-156+
|
— |
PF00160+9-157+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000008+1-161+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR45625+5-156+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-167
|
8ro1_S
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
18439.770
|
9.410
|
6.000
|
22.156
|
12.575
|
50.299
|
49.701
|
13.772
|
8.383
|
53.293
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
midnightblue
|
887.433
|
748.868
|
572.002
|
730.539
|
775.690
|
641.141
|
1041.609
|
787.277
|
673.683
|
1390.835
|
1083.484
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.620
|
-0.173
|
0.463
|
— |
-0.260
|
0.713
|
— |
0.548
|
— | — | — | — | — |
No JSON data available for plots.