Hg_chrom5_TN10mRNA_9726
Organism: Heterodera glycines Gene Locus: chr5:4314259-4317994 Feature type: polypeptideProtein Sequence
Length: 676
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.963 | 0.86 | 0.861 | 0.357 | 1.282 | 1.1 | 0.74 | 1.036 | 1.151 | 1.099 | 0.807 | 1.392 | 1.726 | 0.825 | 1.238 | 1.31 | 0.849 | 1.009 | 0.569 | 0.783 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9149
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.121
|
0.849
|
0.197
|
0.274
|
0.146
|
0.120
|
0.154
|
0.659
|
0.128
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009415
|
1.000
|
1.000
|
Hsc_gene_20163.t1
|
Hsc_gene_16241.t1;Hsc_gene_16244.t1;Hsc_gene_20163.t1
|
— |
Q18486.2 Atypical kinase coq-8, mitochondrial [Caenorhabditis elegans]
|
KAI1718652.1 ABC1 family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.771|GO:0005575_0.727|GO:0110165_0.720|GO:0009987_0.695|GO:0005622_0.641|GO:0016020_0.637|GO:0005737_0.591|GO:0043226_0.585|GO:0043229_0.566|GO:0043227_0.541|GO:0043231_0.515|GO:0008152_0.508
|
IPR004147+318-561+|IPR011009+327-560+|IPR034646+313-567+|IPR051409+188-665+
|
— |
PF03109+318-561+ABC1_atypical_kinase-like_domain
|
— |
PTHR43851+188-665+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-676
|
7udq_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
75567.690
|
6.513
|
0.000
|
25.888
|
11.686
|
48.225
|
51.775
|
13.462
|
12.426
|
49.260
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
2247.387
|
6373.106
|
1968.553
|
2090.049
|
1617.336
|
1480.151
|
1795.617
|
2935.526
|
856.461
|
2342.345
|
1705.537
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.925
|
-1.746
|
0.196
|
-0.402
|
— |
0.289
|
0.882
|
-0.566
|
— | — | — | — | — |
No JSON data available for plots.