SCN Proteipedia

Hg_chrom5_TN10mRNA_9727

Organism: Heterodera glycines Gene Locus: chr5:4318704-4320347 Feature type: polypeptide

Protein Sequence

Length: 257

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.588	0.814	0.99	0.939	1.232	0.998	0.51	0.778	1.47	1.262	0.59	0.687	1.729	0.748	1.588	1.223	0.957	1.002	1.497	1.259	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9150	—	—	1.111	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.975

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	lysosome_vacuole	—	RRKR	—	—	—	—	—	—	0.000	—	—	0.349	0.452	0.217	0.396	0.140	0.579	0.496	0.092	0.169	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009416	1.000	1.000	Hsc_gene_20165.t1	Hsc_gene_20165.t1	—	A4IH75.1 Autophagy-related protein 101 [Xenopus tropicalis]	KAI1727204.1 autophagy-related protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006914	GO:0008150_0.938\|GO:0005575_0.886\|GO:0110165_0.878\|GO:0009987_0.870\|GO:0003674_0.855\|GO:0005622_0.814\|GO:0065007_0.814\|GO:0050789_0.802\|GO:0008152_0.786\|GO:0050794_0.784\|GO:0005737_0.782\|GO:0044238_0.770\|GO:0044237_0.759\|GO:0003824_0.752\|GO:0009058_0.752\|GO:0043170_0.751\|GO:0071840_0.732\|GO:0019538_0.731\|GO:0016043_0.730\|GO:0044249_0.727\|GO:0009059_0.720\|GO:0048519_0.719\|GO:0019222_0.714\|GO:0048523_0.712\|GO:0031323_0.707\|GO:0060255_0.705\|GO:0043412_0.704\|GO:0080090_0.704\|GO:0006996_0.700\|GO:0036211_0.700\|GO:0009056_0.699\|GO:0009889_0.698\|GO:0031326_0.698\|GO:0016740_0.697\|GO:0010556_0.694\|GO:0044085_0.690\|GO:0008283_0.687\|GO:0051246_0.686\|GO:0016787_0.685\|GO:0022607_0.685\|GO:0044248_0.684\|GO:0140096_0.682\|GO:0042127_0.681\|GO:0031399_0.678\|GO:0006914_0.677\|GO:0061919_0.677\|GO:0070925_0.676\|GO:0007033_0.674\|GO:0008285_0.674\|GO:0000045_0.670\|GO:0006497_0.670\|GO:0008641_0.670\|GO:0016236_0.670\|GO:0016462_0.670\|GO:0016746_0.670\|GO:0016755_0.670\|GO:0016817_0.670\|GO:0016818_0.670\|GO:0016874_0.670\|GO:0016877_0.670\|GO:0016887_0.670\|GO:0017111_0.670\|GO:0019777_0.670\|GO:0019778_0.670\|GO:0019786_0.670\|GO:0019787_0.670\|GO:0042157_0.670\|GO:0042158_0.670\|GO:0050746_0.670\|GO:0061650_0.670\|GO:0061651_0.670\|GO:0061659_0.670\|GO:0061660_0.670\|GO:0140657_0.670\|GO:1903059_0.670\|GO:1905037_0.670\|GO:0000407_0.540\|GO:0016020_0.514	IPR012445+1-250_9-204+	—	PF07855+9-204+Autophagy-related_protein_101	—	PTHR13292+1-250+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-257	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.542	29820.970	6.127	-1.000	26.070	14.008	47.860	52.140	13.230	12.840	45.914

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightgreen	1114.278	2079.865	864.394	1461.487	892.592	1115.863	832.218	1591.084	485.385	1196.863	891.944

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.497	-0.646	0.867	-0.743	0.337	-0.414	0.405	-0.792	—	—	—	—	—

No JSON data available for plots.

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