SCN Proteipedia

Hg_chrom5_TN10mRNA_9728

Organism: Heterodera glycines Gene Locus: chr5:4320938-4327698 Feature type: polypeptide

Protein Sequence

Length: 1,331

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.9	0.926	1.12	0.674	1.014	0.963	0.653	1.165	0.952	1.564	0.512	1.414	1.315	0.852	1.503	0.923	0.874	1.32	0.867	0.796	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9151	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	56-76	0.938	—	—	0.000	—	—	0.266	0.252	0.025	0.655	0.158	0.356	0.227	0.075	0.349	0.124

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009417	1.000	1.000	Hsc_gene_20168.t1	Hsc_gene_20166.t1;Hsc_gene_20166.t2;Hsc_gene_20167.t1;Hsc_gene_20168.t1	—	A0A1U8QWA2.1 Glycine betaine reductase ATRR [Aspergillus nidulans FGSC A4]	KAI6192623.1 Fatty acid synthase [Aphelenchoides besseyi]	No	-0.070

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016491\|GO:0031177	GO:0008150_0.889\|GO:0008152_0.677\|GO:0003674_0.630\|GO:0009058_0.616\|GO:0009987_0.608\|GO:0005575_0.554\|GO:0110165_0.546\|GO:0003824_0.528	IPR000873+72-424+\|IPR002347+1087-1104_1087-1283_1165-1176_1212-1228_1238-1257_1259-1276+\|IPR006162+613-628+\|IPR009081+583-658_590-654+\|IPR010080+704-996_704-1017+\|IPR013120+707-946+\|IPR020806+589-658+\|IPR020845+215-226+\|IPR020904+1225-1253+\|IPR025110+488-556+\|IPR029058+579-673+\|IPR036291+703-984_1085-1317+\|IPR036736+584-655+\|IPR042099+52-471+\|IPR045851+473-578+	SM00823+589-658+	PF00106+1087-1283+short_chain_dehydrogenase\|PF00501+72-424+AMP-binding_enzyme\|PF00550+590-654+Phosphopantetheine_attachment_site\|PF07993+707-946+Male_sterility_protein\|PF13193+488-556+AMP-binding_enzyme_C-terminal_domain	G3DSA:3.40.50.720:FF:000047+1080-1329+NADP-dependent_L-serine/L-allo-threonine_dehydrogenase	PTHR44845+55-1003+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-42	1.000	43-1331	4pxh_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.521	149771.680	6.280	-4.500	25.319	10.894	44.853	55.147	13.073	12.246	50.263

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	grey	1984.190	1703.955	2682.224	1708.368	1554.743	2153.944	4075.810	3976.175	737.251	1432.185	1134.356

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.426	-0.133	-0.543	-0.168	0.485	0.931	0.779	—	—	—	—	—	—

No JSON data available for plots.

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