SCN Proteipedia

Hg_chrom5_TN10mRNA_9730

Organism: Heterodera glycines Gene Locus: chr5:4344869-4347005 Feature type: polypeptide

Protein Sequence

Length: 534

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.067	0.697	0.851	0.065	1.092	1.248	1.048	0.562	1.665	1.24	1.021	1.432	0.884	0.612	1.223	0.99	0.89	1.277	0.0	0.771	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9153	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.604

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	KRSR	—	—	—	—	—	—	0.000	—	—	0.070	0.906	0.032	0.110	0.058	0.044	0.067	0.068	0.095	0.017

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009419	1.000	1.000	Hsc_gene_20170.t1	Hsc_gene_20170.t1	—	Q9XXK1.1 ATP synthase subunit alpha, mitochondrial [Caenorhabditis elegans]	KAH7728469.1 mitochondrial ATPase alpha-subunit [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0015986\|GO:0032559\|GO:0045261\|GO:0046034\|GO:0046933\|GO:1902600	GO:0005575_0.883\|GO:0110165_0.869\|GO:0016020_0.760\|GO:0005622_0.696\|GO:0005737_0.669\|GO:0043226_0.652\|GO:0043229_0.622\|GO:0043227_0.595\|GO:0008150_0.592\|GO:0043231_0.581	IPR000194+173-396+\|IPR000793+403-528_407-532+\|IPR004100+50-116+\|IPR005294+25-533_25-534_27-532_29-531+\|IPR020003+387-396+\|IPR023366+26-117+\|IPR027417+118-403_120-402+\|IPR033732+118-399+\|IPR036121+34-118+\|IPR038376+404-534+	—	PF00006+173-396+ATP_synthase_alpha/beta_family,_nucleotide-binding_domain\|PF00306+403-528+ATP_synthase_alpha/beta_chain,_C_terminal_domain\|PF02874+50-116+ATP_synthase_alpha/beta_family,_beta-barrel_domain	G3DSA:1.20.150.20:FF:000001+404-534+ATP_synthase_subunit_alpha\|G3DSA:2.40.30.20:FF:000001+25-117+ATP_synthase_subunit_alpha\|G3DSA:3.40.50.300:FF:002432+118-403+ATP_synthase_subunit_alpha,_mitochondrial	PTHR48082+27-532+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-534	9b3j_C	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.773	58102.930	9.649	11.000	25.094	6.929	45.318	54.682	13.858	11.236	49.813

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	pink	11559.448	2752.386	6473.527	14069.459	20880.492	17597.538	10435.449	8751.610	8662.231	13715.740	11549.950

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.006	2.217	1.228	0.538	-0.232	-0.743	-1.118	0.399	—	—	—	—	—

No JSON data available for plots.

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