Hg_chrom5_TN10mRNA_9736
Organism: Heterodera glycines Gene Locus: chr5:4357660-4358813 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 1.482 | 0.713 | 0.169 | 1.716 | 0.754 | 0.584 | 0.245 | 1.743 | 0.927 | 1.188 | 1.73 | 0.817 | 1.32 | 1.501 | 1.05 | 0.804 | 0.446 | 2.262 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9157
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.310
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.119
|
0.967
|
0.019
|
0.129
|
0.023
|
0.051
|
0.063
|
0.006
|
0.054
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009421
|
1.000
|
1.000
|
Hsc_gene_20174.t1
|
Hsc_gene_20174.t1
|
— |
Q02375.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Bos taurus]
|
KHN71954.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022900
|
GO:0005575_0.884|GO:0110165_0.873|GO:0016020_0.784|GO:0005622_0.758|GO:0005737_0.711|GO:0043226_0.703|GO:0043229_0.684|GO:0043227_0.655|GO:0043231_0.643|GO:0008150_0.626|GO:0009987_0.548|GO:0003674_0.547
|
IPR006885+47-204_104-198+|IPR038532+100-181+
|
— |
PF04800+104-198+NADH_dehydrogenase_ubiquinone_Fe-S_protein_4
|
G3DSA:3.30.160.190:FF:000001+100-181+NADH-ubiquinone_oxidoreductase_21_kDa_subunit_mitochondrial
|
PTHR12219+47-204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-204
|
8q4a_Q
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
23350.570
|
8.824
|
2.500
|
29.902
|
8.333
|
51.471
|
48.529
|
15.686
|
14.216
|
45.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
1323.329
|
770.218
|
1333.741
|
1080.138
|
1427.142
|
1520.007
|
1224.183
|
2187.730
|
1459.895
|
1115.956
|
1263.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
0.351
|
-0.196
|
0.370
|
— |
-0.301
|
0.420
|
-0.695
|
— | — | — | — | — |
No JSON data available for plots.