Hg_chrom5_TN10mRNA_9738
Organism: Heterodera glycines Gene Locus: chr5:4360971-4363584 Feature type: polypeptideProtein Sequence
Length: 452
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.029 | 0.978 | 1.086 | 0.992 | 0.701 | 1.135 | 0.711 | 2.434 | 0.885 | 1.614 | 0.436 | 0.911 | 0.922 | 1.064 | 1.625 | 1.106 | 0.653 | 0.972 | 0.681 | 0.716 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9159
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.966
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
19-40
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.253
|
0.816
|
0.020
|
0.324
|
0.063
|
0.082
|
0.046
|
0.040
|
0.118
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004089
|
2.000
|
1.000
|
Hsc_gene_20176.t1
|
Hsc_gene_20176.t1;Hsc_gene_20176.t2
|
— |
Q5RA52.1 [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial [Pongo abelii]
|
KAH7728374.1 Protein PDP-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0006470|GO:0043169
|
GO:0005575_0.831|GO:0110165_0.826|GO:0016020_0.728|GO:0008150_0.711|GO:0005622_0.697|GO:0043226_0.622|GO:0043229_0.605|GO:0005737_0.593|GO:0043227_0.592|GO:0043231_0.584|GO:0003674_0.580|GO:0009987_0.574
|
IPR000222+84-92+|IPR001932+46-447_54-449_65-449_156-363+|IPR015655+55-450+|IPR036457+21-451_65-450+
|
SM00332+46-447+
|
PF00481+156-363+Protein_phosphatase_2C
|
— |
PTHR13832+55-450+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
50323.320
|
7.959
|
14.000
|
25.885
|
11.504
|
46.239
|
53.761
|
15.708
|
10.177
|
51.549
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1131.611
|
2203.936
|
1419.160
|
1052.631
|
972.504
|
856.319
|
1262.384
|
1270.046
|
540.136
|
1156.828
|
892.531
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.865
|
-1.203
|
-0.322
|
-0.146
|
-0.170
|
0.571
|
0.462
|
— | — | — | — | — | — |
No JSON data available for plots.