SCN Proteipedia

Hg_chrom5_TN10mRNA_9740

Organism: Heterodera glycines Gene Locus: chr5:4363690-4366583 Feature type: polypeptide

Protein Sequence

Length: 474

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.834	0.932	0.844	0.946	0.879	1.136	1.005	1.371	2.016	1.169	0.959	0.869	0.586	1.014	1.119	0.904	0.865	1.279	0.487	0.434	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9160	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	RRLLGVRTEAGKKAAK	—	—	40-73	0.894	—	—	0.000	—	—	0.612	0.228	0.052	0.621	0.135	0.215	0.123	0.053	0.180	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009422	1.000	1.000	Hsc_gene_20177.t1	Hsc_gene_20177.t1	—	P20461.2 Eukaryotic translation initiation factor 2 subunit 3 [Sus scrofa]	KHN77855.1 Eukaryotic translation initiation factor 2 subunit 3 [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000049\|GO:0003924\|GO:0005525	GO:0005575_0.870\|GO:0110165_0.856\|GO:0008150_0.737\|GO:0003674_0.691\|GO:0005622_0.657\|GO:0009987_0.626\|GO:0005737_0.601\|GO:0005488_0.586\|GO:0008152_0.550\|GO:0065007_0.543\|GO:0050789_0.529\|GO:0044237_0.516\|GO:0009058_0.510\|GO:0050794_0.508\|GO:0043170_0.501	IPR000795+40-249_42-245_44-57_132-142_148-159_186-195+\|IPR004161+277-349+\|IPR009000+249-363+\|IPR009001+364-461+\|IPR015256+366-460_371-460+\|IPR027417+33-255_40-249+\|IPR044127+250-363+\|IPR044128+43-249+\|IPR050543+16-470+	—	PF00009+42-245+Elongation_factor_Tu_GTP_binding_domain\|PF03144+277-349+Elongation_factor_Tu_domain_2\|PF09173+371-460+Initiation_factor_eIF2_gamma,_C_terminal	G3DSA:2.40.30.10:FF:000009+250-365+Eukaryotic_translation_initiation_factor_2_subunit_gamma\|G3DSA:2.40.30.10:FF:000011+366-465+Eukaryotic_translation_initiation_factor_2_subunit_gamma\|G3DSA:3.40.50.300:FF:000065+40-249+Eukaryotic_translation_initiation_factor_2_subunit_gamma	PTHR42854+16-470+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-27	1.000	28-474	9hvf_D	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.846	51494.630	8.661	15.500	24.473	6.962	44.515	55.485	14.557	9.916	52.321

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	midnightblue	2648.242	2807.055	2381.236	3624.683	3573.742	3192.087	2564.852	2736.060	2796.982	1658.431	2146.381

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.466	0.232	0.714	—	-0.148	-0.305	-0.329	—	—	—	—	—	—

No JSON data available for plots.

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