SCN Proteipedia

Hg_chrom5_TN10mRNA_9741

Organism: Heterodera glycines Gene Locus: chr5:4369516-4375535 Feature type: polypeptide

Protein Sequence

Length: 883

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.106	0.895	0.844	0.234	0.982	1.539	1.254	1.586	0.629	0.949	0.395	1.199	0.629	0.915	1.988	1.408	0.891	0.635	1.394	0.933	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9161	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.615

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	KRRR,RRRGILFVRSSKLRER	—	—	—	—	—	—	0.000	—	—	0.330	0.210	0.028	0.216	0.679	0.148	0.369	0.267	0.419	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009423	1.000	1.000	Hsc_gene_20178.t1	Hsc_gene_20178.t1	—	Q9ET77.1 Junctophilin-3 [Mus musculus]	KAI1731639.1 junctophilin-3 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0030314	GO:0008150_0.960\|GO:0005575_0.927\|GO:0110165_0.925\|GO:0016020_0.871\|GO:0005622_0.811\|GO:0071944_0.801\|GO:0043226_0.796\|GO:0065007_0.795\|GO:0050789_0.781\|GO:0005886_0.777\|GO:0043229_0.769\|GO:0003674_0.737\|GO:0043227_0.731\|GO:0009987_0.727\|GO:0043231_0.716\|GO:0005737_0.704\|GO:0050794_0.666\|GO:0065008_0.626\|GO:0005773_0.610\|GO:0012505_0.595\|GO:0051179_0.565\|GO:0005783_0.559\|GO:0023052_0.557\|GO:0007154_0.554\|GO:0006810_0.549\|GO:0051234_0.549\|GO:0050896_0.547\|GO:0032879_0.515\|GO:0048519_0.515\|GO:0051716_0.513\|GO:0051049_0.506	IPR003409+12-33_14-34_38-58_58-79_60-76_104-125_106-128_127-148_129-150_306-327_308-328_329-350_331-352+\|IPR017191+1-864+	SM00698+12-33_58-79_104-125_127-148_306-327_329-350+	PF02493+14-34_38-58_60-76_106-128_129-150_308-328_331-352+MORN_repeat	G3DSA:2.20.110.10:FF:000001+310-389+Junctophilin\|G3DSA:2.20.110.10:FF:000013+49-106+Putative_Junctophilin-1	PTHR23085+1-864+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	144-313;396-792;874-883	3.000	1-143;314-395;793-873	7rxq_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.931	97110.330	9.676	30.000	26.048	10.419	51.189	48.811	15.515	10.532	53.454

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	saddlebrown	1918.272	2754.525	3524.383	1764.865	776.323	1152.193	1142.192	2118.766	1231.117	2506.634	1959.984

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.126	-0.779	-0.889	-1.217	0.584	—	0.776	-0.749	—	—	—	—	—

No JSON data available for plots.

Back to Browser