Hg_chrom5_TN10mRNA_9744
Organism: Heterodera glycines Gene Locus: chr5:4379477-4381654 Feature type: polypeptideProtein Sequence
Length: 219
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.69 | 1.062 | 0.747 | 0.315 | 1.674 | 1.171 | 0.652 | 1.142 | 1.421 | 0.987 | 0.761 | 0.537 | 1.395 | 0.966 | 1.584 | 1.37 | 0.823 | 0.899 | 1.054 | 0.806 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9164
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.653
|
0.371
|
0.072
|
0.721
|
0.061
|
0.075
|
0.059
|
0.043
|
0.146
|
0.184
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009426
|
1.000
|
1.000
|
Hsc_gene_20181.t1
|
Hsc_gene_20181.t1
|
— | — |
KAI1729841.1 histidine phosphatase superfamily (branch 1) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.595|GO:0110165_0.588|GO:0005622_0.540|GO:0003674_0.538|GO:0008150_0.508
|
IPR013078+4-170_4-201_5-175+|IPR029033+1-214_1-218+|IPR051710+1-175+
|
SM00855+4-170+
|
PF00300+5-175+Histidine_phosphatase_superfamily_(branch_1)
|
— |
PTHR16469+1-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
219-219
|
1.000
|
1-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
24994.040
|
6.351
|
-0.500
|
29.224
|
11.416
|
52.968
|
47.032
|
15.068
|
14.155
|
46.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
907.577
|
582.717
|
647.868
|
1004.396
|
1257.654
|
1327.719
|
819.161
|
1120.572
|
764.229
|
862.443
|
820.351
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.648
|
0.742
|
0.292
|
— |
-0.687
|
-0.349
|
-0.310
|
— | — | — | — | — |
No JSON data available for plots.