Hg_chrom5_TN10mRNA_9745
Organism: Heterodera glycines Gene Locus: chr5:4381761-4382193 Feature type: polypeptideProtein Sequence
Length: 89
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.392 | 0.261 | 1.43 | 1.55 | 2.809 | 0.864 | 0.268 | 1.124 | 0.749 | 1.215 | 0.511 | 1.983 | 2.185 | 0.864 | 0.917 | 0.803 | 0.921 | 1.362 | 0.0 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9165
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.638
|
0.230
|
0.078
|
0.549
|
0.107
|
0.238
|
0.097
|
0.028
|
0.126
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009427
|
1.000
|
1.000
|
Hsc_gene_20182.t1
|
Hsc_gene_20182.t1
|
— |
Q21102.1 Diphthamide biosynthesis protein 3 [Caenorhabditis elegans]
|
KAI1711496.1 CSL zinc finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.723|GO:0110165_0.707|GO:0008150_0.696|GO:0005622_0.620|GO:0016020_0.568|GO:0043226_0.536|GO:0043229_0.510
|
IPR007872+11-67_13-67+|IPR036671+8-88_10-76+
|
— |
PF05207+13-67+CSL_zinc_finger
|
G3DSA:3.10.660.10:FF:000001+8-88+Diphthamide_biosynthesis_3
|
PTHR21454+10-73+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-89
|
2jr7_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
10399.680
|
3.902
|
-14.000
|
34.831
|
12.360
|
50.562
|
49.438
|
10.112
|
24.719
|
43.820
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
437.393
|
575.861
|
350.344
|
394.949
|
473.670
|
469.596
|
611.418
|
422.740
|
316.579
|
439.195
|
386.645
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.949
|
-0.681
|
0.284
|
0.229
|
— |
0.392
|
-0.257
|
0.676
|
— | — | — | — | — |
No JSON data available for plots.