SCN Proteipedia

Hg_chrom5_TN10mRNA_9746

Organism: Heterodera glycines Gene Locus: chr5:4382658-4393339 Feature type: polypeptide

Protein Sequence

Length: 2,047

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.875	1.068	0.977	0.556	1.254	1.228	0.715	1.075	1.574	1.182	0.829	1.581	1.167	0.808	1.266	0.977	0.761	0.992	0.639	0.876	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9166	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RREVKPEERGTNNSSKRTR	—	—	2-49	0.985	—	—	0.000	—	—	0.375	0.349	0.027	0.591	0.104	0.169	0.146	0.190	0.102	0.143

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004090	1.000	2.000	Hsc_gene_20183.t1;Hsc_gene_20183.t2	Hsc_gene_20183.t1;Hsc_gene_20183.t2	—	P11029.1 Acetyl-CoA carboxylase [Gallus gallus]	KAI1729840.1 carboxyl transferase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003989\|GO:0005524\|GO:0006633\|GO:0016874\|GO:0046872	GO:0008150_0.830\|GO:0005575_0.777\|GO:0110165_0.768\|GO:0003674_0.747\|GO:0009987_0.746\|GO:0005622_0.743\|GO:0005737_0.644\|GO:0008152_0.639\|GO:0043226_0.627\|GO:0016020_0.624\|GO:0003824_0.617\|GO:0043229_0.615\|GO:0044238_0.605\|GO:0044237_0.583\|GO:0043227_0.567\|GO:0043231_0.547\|GO:0044281_0.538\|GO:0009058_0.514\|GO:0016874_0.503	IPR000089+716-791_730-790+\|IPR005479+260-443_277-291_407-414+\|IPR005481+87-206+\|IPR005482+477-584_478-584+\|IPR011053+720-792+\|IPR011054+475-587+\|IPR011761+242-438+\|IPR011762+1271-1629+\|IPR011763+1633-1910+\|IPR011764+86-588+\|IPR013537+790-1066_1067-1247+\|IPR013815+259-323+\|IPR016185+64-209+\|IPR029045+1361-1619_1637-1952+\|IPR034733+1392-1924+\|IPR049074+600-717+\|IPR049076+1065-2041+	SM00878+477-584+	PF00289+87-206+Biotin_carboxylase,_N-terminal_domain\|PF00364+730-790+Biotin-requiring_enzyme\|PF01039+1392-1924+Carboxyl_transferase_domain\|PF02785+478-584+Biotin_carboxylase_C-terminal_domain\|PF02786+260-443+Carbamoyl-phosphate_synthase_L_chain,_ATP_binding_domain\|PF08326+790-1066_1067-1247+Acetyl-CoA_carboxylase,_central_region\|PF21385+600-717+Acetyl-CoA_carboxylase,_BT_domain	G3DSA:2.40.50.100:FF:000005+720-791+Acetyl-CoA_carboxylase_1\|G3DSA:3.30.1490.20:FF:000003+242-322+acetyl-CoA_carboxylase_isoform_X1	PTHR45728+1065-2041+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-2047	4hq6_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.593	230524.260	6.410	-3.000	26.722	10.161	47.582	52.418	13.825	12.897	47.338

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	greenyellow	9987.322	4466.893	5377.460	12183.364	31506.263	20827.499	14053.624	5247.193	1483.375	7458.641	4897.813

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.311	1.287	1.339	-0.584	-0.556	-2.098	1.565	-2.437	3.224	2.382	—	—

No JSON data available for plots.

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