SCN Proteipedia

Hg_chrom5_TN10mRNA_9748

Organism: Heterodera glycines Gene Locus: chr5:4406198-4414181 Feature type: polypeptide

Protein Sequence

Length: 1,627

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.665	1.301	0.805	0.89	0.932	1.671	0.644	1.321	1.202	1.553	0.726	1.482	1.366	0.957	1.016	1.212	0.665	0.903	0.804	0.85	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9168	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKGRRP,KRIFNPLISLEAEYDKKMK	3-27	0.991	—	—	—	—	0.000	—	—	0.578	0.170	0.006	0.335	0.457	0.123	0.262	0.022	0.099	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009429	1.000	1.000	Hsc_gene_20186.t1	Hsc_gene_20185.t1;Hsc_gene_20186.t1	—	F1RCY6.1 Regulator of nonsense transcripts 1 [Danio rerio]	KAI1717891.1 RNA helicase (UPF2 interacting domain) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000184\|GO:0003723\|GO:0003724\|GO:0004386\|GO:0005524\|GO:0005737\|GO:0008270\|GO:0043130	GO:0008150_0.941\|GO:0009987_0.913\|GO:0005575_0.848\|GO:0110165_0.848\|GO:0065007_0.801\|GO:0050789_0.788\|GO:0050794_0.773\|GO:0005622_0.747\|GO:0008152_0.717\|GO:0043170_0.717\|GO:0044238_0.693\|GO:0003674_0.662\|GO:0016020_0.647\|GO:0009058_0.638\|GO:0044237_0.636\|GO:0009059_0.634\|GO:0044249_0.634\|GO:0043226_0.630\|GO:0019222_0.625\|GO:0006139_0.621\|GO:0010467_0.616\|GO:0031323_0.616\|GO:0090304_0.614\|GO:0048519_0.609\|GO:0060255_0.607\|GO:0043229_0.604\|GO:0048523_0.590\|GO:0009889_0.586\|GO:0031326_0.583\|GO:0005737_0.582\|GO:0010468_0.581\|GO:0010556_0.581\|GO:0016070_0.577\|GO:0050896_0.542\|GO:0005488_0.541\|GO:0009892_0.516\|GO:0031324_0.510\|GO:0010605_0.509\|GO:0009890_0.503\|GO:0031327_0.503\|GO:0010558_0.502	IPR001841+337-377_339-376_339-377+\|IPR003892+429-470_432-467+\|IPR013083+312-386+\|IPR018999+664-821_670-821_671-791+\|IPR027417+987-1254_1020-1445_1255-1466+\|IPR040812+880-967_881-966+\|IPR041677+1023-1125_1133-1223+\|IPR041679+1232-1429+\|IPR045055+606-1513+\|IPR047187+1256-1445+	SM00184+339-376+	PF02845+432-467+CUE_domain\|PF09416+670-821+RNA_helicase_(UPF2_interacting_domain)\|PF13086+1023-1125_1133-1223+AAA_domain\|PF13087+1232-1429+AAA_domain\|PF13639+337-377+Ring_finger_domain\|PF18141+880-967+RNA_helicase_UPF1,_1B_domain	G3DSA:3.40.50.300:FF:000097+1255-1466+Regulator_of_nonsense_transcripts_1	PTHR10887+606-1513+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	477-552;616-659;1555-1627	3.000	1-476;553-615;660-1554	2wjy_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.751	183806.560	7.245	17.500	22.434	11.494	47.081	52.919	12.415	10.018	47.203

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellowgreen	3769.719	5719.017	4114.770	3546.289	3751.644	3589.982	4258.297	4471.510	3115.293	3111.735	3113.260

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.705	-0.827	-0.106	—	—	0.256	0.212	—	—	—	—	—	—

No JSON data available for plots.

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