Hg_chrom5_TN10mRNA_9750
Organism: Heterodera glycines Gene Locus: chr5:4417810-4418743 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.562 | 0.449 | 0.439 | 0.333 | 0.725 | 1.239 | 0.92 | 2.174 | 1.074 | 1.893 | 1.098 | 1.421 | 2.818 | 1.208 | 0.493 | 0.897 | 0.396 | 0.878 | 2.23 | 1.137 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9170
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
17-47
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.278
|
0.172
|
0.039
|
0.151
|
0.755
|
0.325
|
0.426
|
0.008
|
0.198
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009431
|
1.000
|
1.000
|
Hsc_gene_20188.t1
|
Hsc_gene_20188.t1
|
— |
Q9XUU9.1 Protein jagunal homolog [Caenorhabditis elegans]
|
KAI1731737.1 jagunal, ER re-organization during oogenesis domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789|GO:0007029
|
GO:0008150_0.946|GO:0009987_0.897|GO:0065007_0.673|GO:0005575_0.644|GO:0050896_0.644|GO:0110165_0.644|GO:0050789_0.640|GO:0051716_0.627|GO:0006810_0.622|GO:0050794_0.622|GO:0051179_0.622|GO:0051234_0.622|GO:0016020_0.612|GO:0023052_0.588|GO:0007154_0.587|GO:0042221_0.575|GO:0071944_0.563|GO:0005886_0.557|GO:0005622_0.555|GO:0005737_0.555|GO:0043226_0.528|GO:0046903_0.517|GO:0140352_0.515|GO:0032940_0.512|GO:0043227_0.512
|
IPR009787+1-188_1-192+
|
— |
PF07086+1-188+Jagunal,_ER_re-organisation_during_oogenesis
|
— |
PTHR20955+1-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;196-207
|
1.000
|
2-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
23933.160
|
9.659
|
10.500
|
20.773
|
21.256
|
36.232
|
63.768
|
14.010
|
6.763
|
38.647
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
913.237
|
1204.879
|
1294.341
|
1090.499
|
1086.948
|
987.532
|
1321.907
|
1034.994
|
1012.262
|
228.304
|
564.286
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.127
|
-0.281
|
-0.138
|
— | — |
0.431
|
— |
0.494
|
— | — | — | — | — |
No JSON data available for plots.