Hg_chrom5_TN10mRNA_9752
Organism: Heterodera glycines Gene Locus: chr5:4422762-4426353 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 0.997 | 0.698 | 0.467 | 1.392 | 1.621 | 0.618 | 1.016 | 1.254 | 1.251 | 1.265 | 1.195 | 1.129 | 0.564 | 1.843 | 1.193 | 0.925 | 0.616 | 1.215 | 0.332 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9172
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKLQKNFKKVKSRQK,RRVASNLSLTAKGQRERRQ,RRQNLALLWGRGEAKKAKN
|
26-53
|
0.997
|
32-82
|
1.000
|
— | — |
0.000
|
— | — |
0.327
|
0.206
|
0.099
|
0.597
|
0.184
|
0.145
|
0.229
|
0.020
|
0.195
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009433
|
1.000
|
1.000
|
Hsc_gene_20190.t1
|
Hsc_gene_20190.t1
|
— |
Q95Q62.1 Inositol-trisphosphate 3-kinase homolog [Caenorhabditis elegans]
|
KAH7728452.1 inositol trisphosphate 3-kinase form 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016301|GO:0032958
|
GO:0005575_0.772|GO:0110165_0.760|GO:0008150_0.750|GO:0003674_0.745|GO:0009987_0.706|GO:0005622_0.659|GO:0043226_0.606|GO:0043229_0.606|GO:0003824_0.605|GO:0016740_0.579|GO:0016772_0.562|GO:0016301_0.558|GO:0065007_0.551|GO:0050789_0.531|GO:0050794_0.519|GO:0016020_0.513|GO:0008152_0.511
|
IPR005522+168-438_227-436+|IPR038286+175-439+
|
— |
PF03770+227-436+Inositol_polyphosphate_kinase
|
— |
PTHR12400+168-438+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15
|
1.000
|
16-443
|
8ppj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
50938.180
|
10.488
|
27.500
|
31.603
|
8.804
|
56.208
|
43.792
|
19.413
|
12.190
|
42.212
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
2691.239
|
1937.344
|
2910.459
|
2061.990
|
1755.745
|
2340.312
|
2128.148
|
5501.772
|
4563.050
|
1363.470
|
2734.719
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.358
|
— |
-0.389
|
-0.264
|
0.429
|
— |
1.130
|
-1.227
|
1.636
|
— | — | — | — |
No JSON data available for plots.