Hg_chrom5_TN10mRNA_9754
Organism: Heterodera glycines Gene Locus: chr5:4432383-4433731 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 1.249 | 1.127 | 0.712 | 1.171 | 0.636 | 0.787 | 1.033 | 1.469 | 1.229 | 1.127 | 1.215 | 1.377 | 0.556 | 1.181 | 0.649 | 0.61 | 1.064 | 1.589 | 1.094 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9174
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.771
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.675
|
0.228
|
0.035
|
0.577
|
0.085
|
0.119
|
0.082
|
0.050
|
0.030
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009435
|
1.000
|
1.000
|
Hsc_gene_20192.t1
|
Hsc_gene_20192.t1
|
— |
A0MTA1.1 DNA-(apurinic or apyrimidinic site) endonuclease [Danio rerio]
|
KAI1718705.1 endonuclease/Exonuclease/phosphatase family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003824|GO:0004518|GO:0004519|GO:0006281
|
GO:0008150_0.930|GO:0003674_0.777|GO:0003824_0.721|GO:0005575_0.635|GO:0008152_0.622|GO:0009987_0.603|GO:0110165_0.560|GO:0140640_0.560|GO:0043170_0.558|GO:0016787_0.535|GO:0044238_0.504
|
IPR004808+6-241_6-242+|IPR005135+10-233+|IPR020847+33-42+|IPR020848+201-212+|IPR036691+3-241_6-242+
|
— |
PF03372+10-233+Endonuclease/Exonuclease/phosphatase_family
|
— |
PTHR22748+6-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-242
|
2o3c_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.598
|
27575.670
|
7.299
|
2.500
|
28.512
|
12.810
|
44.628
|
55.372
|
15.289
|
13.223
|
46.694
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
1365.705
|
725.464
|
769.808
|
704.856
|
878.624
|
757.834
|
1154.214
|
759.298
|
346.253
|
3558.984
|
2182.100
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.145
|
-0.179
|
— |
0.286
|
-0.199
|
0.618
|
— |
0.747
|
-3.484
|
— | — | — | — |
No JSON data available for plots.