Hg_chrom5_TN10mRNA_9755
Organism: Heterodera glycines Gene Locus: chr5:4433903-4436503 Feature type: polypeptideProtein Sequence
Length: 404
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.065 | 1.094 | 1.215 | 0.768 | 0.908 | 0.952 | 0.56 | 1.733 | 1.54 | 1.238 | 0.638 | 0.874 | 1.169 | 0.714 | 0.808 | 1.344 | 0.852 | 0.825 | 2.285 | 0.946 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9175
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
37-67
|
0.960
|
— | — |
0.000
|
— | — |
0.552
|
0.150
|
0.056
|
0.445
|
0.239
|
0.210
|
0.256
|
0.069
|
0.110
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009436
|
1.000
|
1.000
|
Hsc_gene_20193.t1
|
Hsc_gene_20193.t1;Hsc_gene_20193.t2
|
— |
P61962.1 DDB1- and CUL4-associated factor 7 [Homo sapiens]
|
KAI1707364.1 DDB1- and CUL4-associated factor 7 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.712|GO:0110165_0.702|GO:0016020_0.620|GO:0005622_0.610|GO:0005737_0.576|GO:0043226_0.556|GO:0008150_0.541|GO:0043227_0.541|GO:0043229_0.539|GO:0043231_0.523
|
IPR001680+151-210_225-267_229-267_232-276_317-357_320-357_324-358+|IPR015943+58-404+|IPR019775+344-358+|IPR036322+69-399+|IPR045159+58-404+
|
SM00320+151-210_225-267_317-357+
|
PF00400+229-267_320-357+WD_domain,_G-beta_repeat
|
— |
PTHR19919+58-404+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-404
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
45366.180
|
5.233
|
-9.000
|
23.762
|
13.861
|
46.782
|
53.218
|
11.634
|
12.129
|
51.238
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
1390.373
|
1855.782
|
1481.921
|
1168.902
|
1072.450
|
1066.622
|
1765.847
|
1844.876
|
926.293
|
1542.013
|
1278.133
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.554
|
-0.804
|
-0.234
|
-0.157
|
— |
0.738
|
0.684
|
— | — | — | — | — | — |
No JSON data available for plots.