Hg_chrom5_TN10mRNA_9756
Organism: Heterodera glycines Gene Locus: chr5:4436431-4437895 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 0.684 | 0.401 | 2.535 | 0.245 | 0.566 | 0.7 | 1.471 | 1.307 | 1.093 | 0.223 | 1.73 | 1.634 | 3.394 | 1.05 | 0.525 | 1.085 | 1.337 | 1.131 | 0.649 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9176
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.790
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.183
|
0.053
|
0.033
|
0.248
|
0.175
|
0.611
|
0.404
|
0.002
|
0.771
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004091
|
2.000
|
1.000
|
Hsc_gene_20194.t1
|
Hsc_gene_20194.t1
|
— | — |
KAI1731732.1 LITAF-like zinc ribbon domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.804|GO:0110165_0.803|GO:0008150_0.799|GO:0009987_0.607|GO:0050896_0.579|GO:0005622_0.525|GO:0016020_0.521
|
IPR006629+47-135_61-133_62-135+|IPR037519+2-136+
|
SM00714+62-135+
|
PF10601+61-133+LITAF-like_zinc_ribbon_domain
|
— |
PTHR23292+2-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.965
|
14925.790
|
8.176
|
6.000
|
13.235
|
12.500
|
28.676
|
71.324
|
9.559
|
3.676
|
60.294
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1687.669
|
1166.656
|
1684.319
|
1105.771
|
1126.780
|
1205.899
|
1745.417
|
2749.901
|
1608.637
|
2132.794
|
1908.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.300
|
-0.214
|
-0.498
|
— | — |
0.545
|
1.086
|
-0.513
|
— | — | — | — | — |
No JSON data available for plots.