Hg_chrom5_TN10mRNA_9757
Organism: Heterodera glycines Gene Locus: chr5:4439120-4441344 Feature type: polypeptideProtein Sequence
Length: 215
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 0.649 | 1.015 | 0.16 | 1.085 | 1.073 | 0.498 | 1.395 | 0.827 | 1.571 | 1.55 | 1.642 | 1.163 | 0.805 | 0.949 | 1.528 | 0.762 | 1.339 | 0.358 | 0.547 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9177
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PKPS,KKYLEREKNGTSKERKE,KKVNTESALLWASREKVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.447
|
0.291
|
0.015
|
0.652
|
0.139
|
0.271
|
0.299
|
0.066
|
0.300
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004092
|
2.000
|
1.000
|
Hsc_gene_20195.t1
|
Hsc_gene_16841.t1;Hsc_gene_20195.t1
|
— |
Q19143.4 NF-kappa-B inhibitor-interacting Ras-like protein [Caenorhabditis elegans]
|
KAH7727641.1 Protein F52A8.6 c [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525|GO:0043124
|
GO:0008150_0.827|GO:0005575_0.804|GO:0110165_0.800|GO:0009987_0.771|GO:0005622_0.736|GO:0065007_0.658|GO:0050789_0.640|GO:0050794_0.628|GO:0016020_0.590|GO:0003674_0.582|GO:0050896_0.551|GO:0005488_0.545|GO:0051716_0.525
|
IPR001806+1-213_7-186+|IPR027417+2-213_4-204+|IPR042227+1-208+
|
SM00173+2-190+|SM00175+5-190+
|
PF00071+7-186+Ras_family
|
— |
PTHR46152+1-208+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-215
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
24174.940
|
9.902
|
9.000
|
29.767
|
9.302
|
52.093
|
47.907
|
17.674
|
12.093
|
46.977
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
1088.578
|
2289.752
|
1724.810
|
1473.831
|
1235.882
|
1116.501
|
930.643
|
1484.925
|
435.914
|
589.465
|
523.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.639
|
-0.773
|
-0.118
|
-0.286
|
— |
-0.252
|
0.306
|
-0.530
|
— | — | — | — | — |
No JSON data available for plots.