Hg_chrom5_TN10mRNA_9758
Organism: Heterodera glycines Gene Locus: chr5:4439120-4441355 Feature type: polypeptideProtein Sequence
Length: 222
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.681 | 0.629 | 0.983 | 0.155 | 1.051 | 1.155 | 0.375 | 1.351 | 0.801 | 1.522 | 1.433 | 1.855 | 1.376 | 1.04 | 0.919 | 1.609 | 0.738 | 1.229 | 0.347 | 0.662 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9177
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
PKPS,KKYLEREKNGTSKERKE,KKVNTESALLWASREKVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.296
|
0.501
|
0.018
|
0.667
|
0.193
|
0.329
|
0.411
|
0.030
|
0.301
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004092
|
2.000
|
1.000
|
Hsc_gene_20195.t1
|
Hsc_gene_16841.t1;Hsc_gene_20195.t1
|
— |
Q19143.4 NF-kappa-B inhibitor-interacting Ras-like protein [Caenorhabditis elegans]
|
KAH7727641.1 Protein F52A8.6 c [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525|GO:0043124
|
GO:0005575_0.774|GO:0110165_0.774|GO:0005622_0.737|GO:0008150_0.693|GO:0009987_0.634|GO:0065007_0.592|GO:0003674_0.583|GO:0050789_0.575|GO:0050794_0.568|GO:0005488_0.550|GO:0016020_0.508
|
IPR001806+1-220+|IPR027417+8-220_31-211+|IPR042227+29-215+
|
SM00173+24-197+
|
— | — |
PTHR46152+29-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-222
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
25086.970
|
9.714
|
8.000
|
28.378
|
10.360
|
51.351
|
48.649
|
16.667
|
11.712
|
46.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
1088.578
|
2289.752
|
1724.810
|
1473.831
|
1235.882
|
1116.501
|
930.643
|
1484.925
|
435.914
|
589.465
|
523.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.639
|
-0.773
|
-0.118
|
-0.286
|
— |
-0.252
|
0.306
|
-0.530
|
— | — | — | — | — |
No JSON data available for plots.