Hg_chrom5_TN10mRNA_9759
Organism: Heterodera glycines Gene Locus: chr5:4441641-4443174 Feature type: polypeptideProtein Sequence
Length: 359
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.263 | 0.324 | 1.367 | 0.192 | 1.486 | 0.571 | 0.464 | 0.696 | 0.248 | 1.054 | 1.899 | 0.492 | 0.851 | 2.196 | 0.398 | 0.955 | 1.279 | 1.055 | 0.643 | 0.655 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9178
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
PKKADKKKSEEAPAKEPKKKADKKKKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.256
|
0.125
|
0.062
|
0.317
|
0.661
|
0.439
|
0.485
|
0.042
|
0.199
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000817
|
4.000
|
2.000
|
Hsc_gene_1189.t1;Hsc_gene_1190.t1
|
Hsc_gene_13201.t1;Hsc_gene_13201.t2;Hsc_gene_16847.t1
|
— |
Q6CE07.2 Protein YOP1 [Yarrowia lipolytica CLIB122]
|
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.847|GO:0005575_0.810|GO:0110165_0.810|GO:0016020_0.780|GO:0005622_0.743|GO:0071944_0.717|GO:0043226_0.716|GO:0005886_0.713|GO:0043229_0.705|GO:0043227_0.681|GO:0009987_0.670|GO:0043231_0.658|GO:0005737_0.624|GO:0005773_0.564|GO:0012505_0.540
|
IPR004345+271-351_273-349+
|
— |
PF03134+273-349+TB2/DP1,_HVA22_family
|
— |
PTHR12300+271-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-210
|
1.000
|
211-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.607
|
39055.190
|
5.399
|
-4.500
|
32.312
|
7.521
|
50.418
|
49.582
|
15.877
|
16.435
|
57.103
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1499.134
|
99.077
|
100.811
|
196.864
|
558.458
|
7134.511
|
187.225
|
5780.385
|
25.448
|
1268.124
|
735.549
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.853
|
1.074
|
1.474
|
3.689
|
-5.242
|
— |
-4.801
|
-5.773
|
— | — | — | — |
No JSON data available for plots.