SCN Proteipedia

Hg_chrom5_TN10mRNA_9761

Organism: Heterodera glycines Gene Locus: chr5:4445793-4457034 Feature type: polypeptide

Protein Sequence

Length: 2,565

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.938	1.079	1.021	0.524	0.968	1.3	0.608	1.462	1.014	1.507	0.721	1.101	1.245	0.87	1.201	1.476	0.677	0.921	1.41	0.482	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9180	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	lysosome_vacuole	—	RHRR,KKNPKMGAQLKRARGR,KKQHEYLLRCLPIKQRRA,KRQEPMDAALFYLAMRKKN	—	—	—	—	—	—	0.000	—	—	0.334	0.156	0.024	0.367	0.272	0.627	0.447	0.101	0.235	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002208	2.000	2.000	Hsc_gene_20196.t1;Hsc_gene_20196.t2	Hsc_gene_20196.t1;Hsc_gene_20196.t2	—	Q6PNC0.1 DmX-like protein 1 [Mus musculus]	KAH7720535.1 RAVE complex protein Rav1 C-terminal [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.921\|GO:0110165_0.909\|GO:0005622_0.850\|GO:0016020_0.799\|GO:0005737_0.767\|GO:0043226_0.764\|GO:0071944_0.753\|GO:0005886_0.749\|GO:0043229_0.735\|GO:0043227_0.699\|GO:0008150_0.679\|GO:0043231_0.674\|GO:0009987_0.640\|GO:0005773_0.604\|GO:0012505_0.593\|GO:0030054_0.546\|GO:0065007_0.541\|GO:0031982_0.535\|GO:0097708_0.518\|GO:0031410_0.516\|GO:0045202_0.515\|GO:0050789_0.513\|GO:0003674_0.511	IPR001680+169-212_184-211_217-266_2277-2313_2318-2357_2364-2407_2413-2452_2417-2452_2420-2461_2455-2497_2465-2497+\|IPR015943+62-335_2242-2555+\|IPR022033+985-1352+\|IPR036322+51-266_2237-2552+\|IPR052208+8-641+	SM00320+169-212_217-266_2277-2313_2318-2357_2364-2407_2413-2452_2455-2497+	PF00400+184-211_2417-2452_2465-2497+WD_domain,_G-beta_repeat\|PF12234+985-1352+RAVE_protein_1_C_terminal	—	PTHR13950+8-641+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	804-853;1942-2004	3.000	1-803;854-1941;2005-2565	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.724	286735.280	6.914	17.500	24.990	10.877	49.162	50.838	13.567	11.423	50.019

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	4377.270	6075.381	5452.833	3910.390	3607.325	3546.236	5126.557	3600.337	4351.618	4142.194	4231.947

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.385	-0.773	-0.371	-0.148	—	0.541	—	0.653	—	—	—	—	—

No JSON data available for plots.

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