Hg_chrom5_TN10mRNA_9763
Organism: Heterodera glycines Gene Locus: chr5:4457315-4459685 Feature type: polypeptideProtein Sequence
Length: 632
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.012 | 0.92 | 0.748 | 0.327 | 0.87 | 0.609 | 0.584 | 1.82 | 1.547 | 1.924 | 0.671 | 1.117 | 1.978 | 0.791 | 1.066 | 1.221 | 0.415 | 1.127 | 0.852 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9181
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
16-39
|
0.894
|
— | — | — | — |
0.003
|
— | — |
0.120
|
0.036
|
0.011
|
0.169
|
0.816
|
0.432
|
0.409
|
0.004
|
0.222
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009437
|
1.000
|
1.000
|
Hsc_gene_20197.t1
|
Hsc_gene_20197.t1
|
— | — |
KAI1731717.1 gaa1-like, GPI transamidase component domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0042765
|
GO:0005575_0.762|GO:0110165_0.762|GO:0016020_0.732|GO:0005886_0.705|GO:0071944_0.705|GO:0005622_0.655|GO:0008150_0.638|GO:0005737_0.629|GO:0043226_0.621|GO:0043229_0.605|GO:0009987_0.596|GO:0043227_0.595|GO:0043231_0.582|GO:0005773_0.560|GO:0012505_0.539
|
IPR007246+15-591_128-591+
|
— |
PF04114+128-591+Gaa1-like,_GPI_transamidase_component
|
— |
PTHR13304+15-591+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
624-632
|
1.000
|
1-623
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
71018.870
|
8.069
|
13.500
|
22.627
|
14.399
|
40.032
|
59.968
|
13.291
|
9.335
|
45.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
2486.406
|
2174.836
|
2090.423
|
1877.059
|
1703.140
|
2035.420
|
1773.328
|
2696.565
|
2034.518
|
3970.598
|
3140.849
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.287
|
-0.349
|
— |
-0.172
|
0.272
|
-0.191
|
0.299
|
-0.464
|
— | — | — | — | — |
No JSON data available for plots.