Hg_chrom5_TN10mRNA_9766
Organism: Heterodera glycines Gene Locus: chr5:4465541-4467024 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 0.564 | 1.212 | 0.522 | 1.212 | 1.01 | 0.866 | 1.212 | 1.212 | 1.392 | 0.735 | 1.783 | 0.758 | 1.107 | 2.041 | 0.866 | 0.795 | 0.505 | 0.932 | 1.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9184
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKYVREDGTHRRQRD,RKNIQEHPYDWEEGRKKTQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.566
|
0.337
|
0.003
|
0.622
|
0.043
|
0.066
|
0.042
|
0.015
|
0.111
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009440
|
1.000
|
1.000
|
Hsc_gene_20200.t1
|
Hsc_gene_20200.t1
|
— |
Q54DF7.1 Probable serine/threonine-protein kinase DDB_G0292354 [Dictyostelium discoideum]
|
AAL78213.1 probable protein kinase Hgg-20 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.863|GO:0110165_0.863|GO:0005622_0.823|GO:0008150_0.753|GO:0003674_0.681|GO:0009987_0.680|GO:0005737_0.671|GO:0043226_0.646|GO:0043229_0.646|GO:0016020_0.615|GO:0003824_0.610|GO:0065007_0.587|GO:0050789_0.578|GO:0016740_0.565|GO:0050794_0.559|GO:0043227_0.543|GO:0140096_0.539|GO:0008152_0.508|GO:0043231_0.505
|
IPR000719+18-307_19-298+|IPR011009+15-317+|IPR017441+24-47+|IPR050235+15-324+
|
SM00220+18-307+
|
PF00069+19-298+Protein_kinase_domain
|
— |
PTHR11909+15-324+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;318-330
|
1.000
|
3-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
37915.180
|
8.311
|
7.000
|
31.212
|
10.909
|
48.485
|
51.515
|
17.273
|
13.939
|
44.242
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
2764.728
|
156.707
|
199.275
|
187.499
|
424.059
|
6568.086
|
1339.756
|
10714.617
|
72.749
|
4694.875
|
2713.964
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.147
|
3.967
|
-2.283
|
0.594
|
-2.853
|
-6.139
|
— |
-3.226
|
— | — |
No JSON data available for plots.