Hg_chrom5_TN10mRNA_9771
Organism: Heterodera glycines Gene Locus: chr5:4481509-4486128 Feature type: polypeptideProtein Sequence
Length: 995
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 0.631 | 0.658 | 0.936 | 0.486 | 1.005 | 0.586 | 1.156 | 1.117 | 1.929 | 0.305 | 0.828 | 2.764 | 1.024 | 1.067 | 1.464 | 0.708 | 1.051 | 1.546 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9189
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.526
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.109
|
0.131
|
0.003
|
0.179
|
0.546
|
0.688
|
0.621
|
0.008
|
0.460
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009444
|
1.000
|
1.000
|
Hsc_gene_20205.t1
|
Hsc_gene_20205.t1
|
— |
Q6R5J2.1 Protein dispatched homolog 1 [Danio rerio]
|
KAI6229247.1 Protein dispatched [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.801|GO:0005575_0.665|GO:0110165_0.665|GO:0071944_0.660|GO:0005886_0.654|GO:0016020_0.654|GO:0009987_0.600|GO:0032501_0.579|GO:0032502_0.524|GO:0048856_0.524|GO:0007275_0.504|GO:0065007_0.501
|
IPR000731+350-474+|IPR003392+655-953+|IPR052081+5-958+|IPR053958+350-478+
|
— |
PF02460+655-953+Patched_family|PF12349+350-478+Sterol-sensing_domain_of_SREBP_cleavage-activation
|
— |
PTHR45951+5-958+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-995
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
111683.200
|
8.018
|
18.500
|
16.080
|
16.482
|
37.286
|
62.714
|
9.548
|
6.533
|
48.744
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
392.035
|
209.804
|
217.927
|
151.907
|
527.928
|
543.831
|
496.791
|
156.316
|
15.697
|
839.189
|
486.264
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.603
|
-0.411
|
1.764
|
— | — |
-1.909
|
1.812
|
-5.891
|
— | — | — | — |
No JSON data available for plots.