Hg_chrom5_TN10mRNA_9772
Organism: Heterodera glycines Gene Locus: chr5:4487198-4489126 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.777 | 0.989 | 0.957 | 0.628 | 1.383 | 1.453 | 0.627 | 2.328 | 1.305 | 1.231 | 1.043 | 1.072 | 0.843 | 0.545 | 1.281 | 1.504 | 0.498 | 1.012 | 0.467 | 0.417 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9190
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRAPHESDAIRRKLEK,LYKSKSQQRRVKVRKGR,RKHSLYKSKSQQRRVKVRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.309
|
0.196
|
0.025
|
0.601
|
0.124
|
0.269
|
0.329
|
0.043
|
0.339
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009445
|
1.000
|
1.000
|
Hsc_gene_20206.t1
|
Hsc_gene_20206.t1
|
— |
Q8BH60.1 Golgi-associated PDZ and coiled-coil motif-containing protein [Mus musculus]
|
KAI1731745.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005794
|
GO:0005575_0.921|GO:0110165_0.905|GO:0008150_0.777|GO:0005622_0.739|GO:0016020_0.686|GO:0043226_0.650|GO:0009987_0.649|GO:0043229_0.617|GO:0003674_0.532|GO:0071944_0.529|GO:0005488_0.523|GO:0005737_0.515|GO:0043227_0.512
|
IPR001478+304-375_305-373_306-374_314-391+|IPR036034+286-407_292-377+|IPR038879+57-469+
|
SM00228+314-391+
|
PF00595+306-374+PDZ_domain
|
— |
PTHR16528+57-469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
271-316;434-494
|
2.000
|
1-270;317-433
|
7jzr_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
55537.770
|
7.330
|
9.500
|
31.377
|
9.717
|
54.858
|
45.142
|
17.814
|
13.563
|
46.356
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
168.040
|
202.972
|
670.551
|
375.216
|
80.404
|
47.259
|
21.724
|
380.297
|
88.814
|
1.656
|
39.009
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.496
|
0.750
|
-0.730
|
-2.254
|
-0.752
|
-1.111
|
2.907
|
-3.988
|
— | — |
4.956
|
— | — |
No JSON data available for plots.