Hg_chrom5_TN10mRNA_9776
Organism: Heterodera glycines Gene Locus: chr5:4522627-4523730 Feature type: polypeptideProtein Sequence
Length: 156
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.522 | 1.342 | 0.816 | 0.663 | 1.175 | 1.808 | 0.763 | 0.641 | 1.14 | 1.213 | 1.457 | 2.262 | 1.068 | 0.863 | 0.916 | 1.007 | 0.631 | 1.068 | 0.986 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9193
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.444
|
0.199
|
0.048
|
0.842
|
0.251
|
0.270
|
0.239
|
0.009
|
0.341
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009448
|
1.000
|
1.000
|
Hsc_gene_20211.t1
|
Hsc_gene_20211.t1
|
— |
Q08092.1 Calponin-1 [Sus scrofa]
|
KAF7639190.1 Calponin-homology (CH) domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.822|GO:0005575_0.772|GO:0110165_0.760|GO:0005622_0.729|GO:0009987_0.704|GO:0043226_0.590|GO:0005737_0.566|GO:0043229_0.556|GO:0003674_0.522
|
IPR001715+30-140_32-135_35-140+|IPR003096+28-41_58-73_91-107_107-122_128-142+|IPR036872+16-149_25-142+|IPR050606+12-142+
|
SM00033+32-135+
|
PF00307+35-140+Calponin_homology_(CH)_domain
|
— |
PTHR47385+12-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20
|
1.000
|
21-156
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
17704.410
|
9.126
|
5.000
|
26.923
|
8.333
|
50.641
|
49.359
|
15.385
|
11.538
|
45.513
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
2398.363
|
753.413
|
1083.270
|
923.002
|
477.817
|
277.064
|
252.668
|
872.792
|
1379.792
|
7717.983
|
5001.615
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.295
|
0.156
|
— |
-0.980
|
-0.773
|
— |
1.551
|
-1.644
|
-2.581
|
— |
-3.909
|
— | — |
No JSON data available for plots.