Hg_chrom5_TN10mRNA_9779
Organism: Heterodera glycines Gene Locus: chr5:4527923-4528760 Feature type: polypeptideProtein Sequence
Length: 163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 1.712 | 1.004 | 0.635 | 0.511 | 0.472 | 0.803 | 2.147 | 1.772 | 1.409 | 0.465 | 1.083 | 2.556 | 0.826 | 1.002 | 1.052 | 0.402 | 0.744 | 2.36 | 0.902 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9196
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.261
|
0.204
|
0.103
|
0.221
|
0.800
|
0.327
|
0.240
|
0.045
|
0.146
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q9H0R3.2 Transmembrane protein 222 [Homo sapiens]
|
KAI6178839.1 LRRcap domain-containing protein [Aphelenchoides besseyi];KAI6208173.1 LRRcap domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.884|GO:0110165_0.884|GO:0016020_0.854|GO:0071944_0.820|GO:0005886_0.800|GO:0008150_0.648|GO:0005622_0.549|GO:0005737_0.549|GO:0043226_0.508|GO:0043227_0.508|GO:0043229_0.508|GO:0043231_0.508
|
IPR008496+3-159_6-133+
|
— |
PF05608+6-133+Domain_of_unknown_function_(DUF778)
|
— |
PTHR20921+3-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-163
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
18687.430
|
7.103
|
2.500
|
20.859
|
19.632
|
39.877
|
60.123
|
12.270
|
8.589
|
47.239
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
875.810
|
407.520
|
545.913
|
635.579
|
802.895
|
1093.912
|
658.748
|
1131.155
|
617.502
|
1390.145
|
1059.012
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.194
|
0.504
|
0.327
|
0.305
|
0.461
|
-0.725
|
— |
-0.640
|
— | — | — | — | — |
No JSON data available for plots.