Hg_chrom5_TN10mRNA_9780
Organism: Heterodera glycines Gene Locus: chr5:4528899-4529950 Feature type: polypeptideProtein Sequence
Length: 248
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.469 | 1.594 | 1.026 | 0.278 | 1.411 | 2.068 | 0.624 | 0.605 | 1.434 | 1.744 | 1.161 | 0.474 | 0.448 | 0.62 | 1.564 | 0.691 | 0.859 | 1.039 | 0.0 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9197
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRIRLAERQAAKKLFK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.710
|
0.106
|
0.006
|
0.612
|
0.154
|
0.164
|
0.188
|
0.004
|
0.065
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009451
|
1.000
|
1.000
|
Hsc_gene_20214.t1
|
Hsc_gene_20214.t1
|
— |
Q9BLB6.1 Probable U2 small nuclear ribonucleoprotein A' [Caenorhabditis elegans]
|
KAI1728004.1 leucine-rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.883|GO:0110165_0.871|GO:0005622_0.839|GO:0008150_0.809|GO:0043226_0.762|GO:0009987_0.755|GO:0016020_0.727|GO:0043229_0.698|GO:0043227_0.655|GO:0032991_0.604|GO:0043231_0.539|GO:0005737_0.514|GO:0005634_0.501
|
IPR001611+43-64_89-110_114-135+|IPR003591+63-86_87-111_112-133+|IPR032675+1-176+
|
SM00369+63-86_87-111_112-133+
|
PF14580+1-173+Leucine-rich_repeat
|
G3DSA:3.80.10.10:FF:000026+1-176+U2_small_nuclear_ribonucleoprotein_A
|
PTHR10552+1-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
218-248
|
1.000
|
1-217
|
9fmd_o
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
28399.390
|
8.910
|
4.500
|
30.645
|
5.242
|
55.645
|
44.355
|
16.532
|
14.113
|
42.742
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1892.695
|
1707.184
|
1589.471
|
1776.517
|
1649.776
|
1229.334
|
1040.109
|
1247.419
|
3123.495
|
2097.989
|
2537.492
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.333
|
— |
0.269
|
-0.139
|
-0.410
|
-0.232
|
— | — | — | — | — | — | — |
No JSON data available for plots.