Hg_chrom5_TN10mRNA_9781
Organism: Heterodera glycines Gene Locus: chr5:4530111-4533535 Feature type: polypeptideProtein Sequence
Length: 577
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.685 | 0.846 | 1.26 | 0.478 | 1.906 | 1.333 | 0.413 | 1.213 | 1.04 | 1.288 | 0.893 | 1.325 | 1.348 | 0.933 | 1.521 | 1.213 | 0.909 | 0.604 | 0.267 | 0.51 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9198
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
FKRR,KRRR,RRDFDSSLKKQRKSRP,RRAVIRRDFDSSLKKQRKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.473
|
0.152
|
0.031
|
0.638
|
0.065
|
0.101
|
0.128
|
0.044
|
0.130
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009452
|
1.000
|
1.000
|
Hsc_gene_20216.t1
|
Hsc_gene_20215.t1;Hsc_gene_20216.t1
|
— | — |
KAI1718784.1 ligand-binding domain of nuclear hormone receptor domain-containing protein [Ditylenchus destructor]
|
DAG59033
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
419-481;549-577
|
2.000
|
1-418;482-548
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
66371.290
|
4.808
|
-22.000
|
34.142
|
9.359
|
57.019
|
42.981
|
15.771
|
18.371
|
44.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
1407.161
|
1868.987
|
1346.422
|
1175.124
|
1211.320
|
1017.894
|
1416.421
|
1272.237
|
1213.899
|
1755.252
|
1523.244
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.703
|
-0.806
|
— | — |
-0.236
|
0.487
|
0.217
|
0.298
|
— | — | — | — | — |
No JSON data available for plots.