Hg_chrom5_TN10mRNA_9783
Organism: Heterodera glycines Gene Locus: chr5:4537624-4540199 Feature type: polypeptideProtein Sequence
Length: 662
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.773 | 1.3 | 0.742 | 0.99 | 1.057 | 0.93 | 0.629 | 1.133 | 0.806 | 1.347 | 0.732 | 1.244 | 1.217 | 1.365 | 1.572 | 1.403 | 1.015 | 0.915 | 0.697 | 0.178 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9200
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRKTTDSKEGTKIREEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.595
|
0.245
|
0.090
|
0.445
|
0.126
|
0.086
|
0.144
|
0.212
|
0.165
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009453
|
1.000
|
1.000
|
Hsc_gene_20217.t1
|
Hsc_gene_20217.t1
|
— |
Q5FW46.1 Atos homolog protein A [Xenopus tropicalis]
|
KAI1731659.1 chromosome segregation during meiosis domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.916|GO:0110165_0.916|GO:0016020_0.842|GO:0005622_0.837|GO:0043226_0.802|GO:0043229_0.784|GO:0043227_0.764|GO:0043231_0.747|GO:0005634_0.666
|
IPR025261+419-480_419-489+|IPR033473+588-661+|IPR051506+206-661+
|
SM01177+419-489+
|
PF13889+588-661+Chromosome_segregation_during_meiosis|PF13915+419-480+Domain_of_unknown_function_(DUF4210)
|
— |
PTHR13199+206-661+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
227-407;640-662
|
2.000
|
1-226;408-639
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
73447.730
|
8.795
|
21.500
|
25.227
|
8.157
|
50.453
|
49.547
|
14.804
|
10.423
|
53.625
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
5391.604
|
10129.318
|
7668.354
|
3462.694
|
2541.112
|
5640.286
|
3457.550
|
10406.302
|
5389.555
|
3306.495
|
4199.235
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.631
|
-1.686
|
-1.038
|
-0.478
|
1.165
|
-0.696
|
0.778
|
-1.446
|
— | — | — | — | — |
No JSON data available for plots.