Hg_chrom5_TN10mRNA_9785
Organism: Heterodera glycines Gene Locus: chr5:4544149-4545485 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.889 | 0.695 | 0.725 | 0.458 | 0.997 | 0.852 | 0.751 | 0.831 | 1.107 | 1.482 | 0.705 | 1.563 | 1.846 | 0.894 | 1.492 | 0.902 | 0.871 | 1.409 | 1.533 | 0.586 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9202
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
3-24
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.099
|
0.050
|
0.003
|
0.138
|
0.684
|
0.206
|
0.756
|
0.009
|
0.103
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004094
|
1.000
|
2.000
|
Hsc_gene_20220.t1;Hsc_gene_20220.t2
|
Hsc_gene_20220.t1;Hsc_gene_20220.t2
|
— |
D4AD37.1 Golgi-resident adenosine 3',5'-bisphosphate 3'-phosphatase [Rattus norvegicus]
|
KAH7728354.1 Protein Y6B3B.5 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.756|GO:0110165_0.756|GO:0005622_0.636|GO:0005737_0.619|GO:0016020_0.549|GO:0071944_0.537|GO:0005886_0.514
|
IPR000760+71-276+|IPR050725+34-276+
|
— |
PF00459+71-276+Inositol_monophosphatase_family
|
G3DSA:3.30.540.10:FF:000012+41-211+Blast:Putative_inositol_monophosphatase_3
|
PTHR43028+34-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-301
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
34007.590
|
9.379
|
8.500
|
23.588
|
12.292
|
41.528
|
58.472
|
13.621
|
9.967
|
47.841
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
903.677
|
1113.308
|
1251.445
|
1247.113
|
1220.304
|
1350.259
|
921.855
|
1272.742
|
269.594
|
610.008
|
464.117
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.104
|
— | — |
-0.542
|
— |
-0.324
|
— | — | — | — | — |
No JSON data available for plots.