Hg_chrom5_TN10mRNA_9787
Organism: Heterodera glycines Gene Locus: chr5:4546747-4550863 Feature type: polypeptideProtein Sequence
Length: 608
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.65 | 0.994 | 0.867 | 1.248 | 1.371 | 0.675 | 0.881 | 1.234 | 0.768 | 1.111 | 0.748 | 0.871 | 2.056 | 0.917 | 1.846 | 1.198 | 0.89 | 0.748 | 0.633 | 0.629 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9204
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
LGEV,EKNELKRERRNGNNEKTEEKRERRKKDGREEEMGGEKGGKCERKEAEGTERKRDGKSRRNNEVAAK
|
— | — |
9-48
|
0.956
|
1-24
|
0.903
|
0.582
|
1.000
|
1.000
|
0.139
|
0.020
|
0.014
|
0.285
|
0.386
|
0.477
|
0.349
|
0.027
|
0.774
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009455
|
1.000
|
1.000
|
Hsc_gene_20222.t1
|
Hsc_gene_20222.t1
|
— | — |
KAI6208017.1 Neuropilin and tolloid-like protein 1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.840|GO:0005575_0.770|GO:0110165_0.744|GO:0009987_0.709|GO:0003674_0.585|GO:0016020_0.542|GO:0032502_0.504|GO:0048856_0.504
|
IPR000859+56-181_60-181_63-180_68-178_204-273_204-350_204-352+|IPR002172+389-434+|IPR035914+58-183_67-181_203-329_205-353+|IPR053207+60-409+
|
SM00042+60-181_204-352+
|
PF00431+68-178_204-273+CUB_domain
|
— |
PTHR47537+60-409+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
477-608
|
1.000
|
1-476
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
69032.040
|
8.024
|
13.500
|
29.441
|
12.829
|
50.164
|
49.836
|
16.447
|
12.993
|
49.178
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
699.365
|
871.533
|
1863.327
|
748.816
|
289.199
|
272.204
|
112.096
|
642.452
|
225.037
|
1091.086
|
719.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
-0.356
|
-1.206
|
-1.405
|
— |
-1.270
|
1.135
|
-2.376
|
— | — | — | — | — |