SCN Proteipedia

Hg_chrom5_TN10mRNA_9789

Organism: Heterodera glycines Gene Locus: chr5:4554574-4557610 Feature type: polypeptide

Protein Sequence

Length: 489

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.547	1.474	1.264	0.494	1.295	0.996	0.949	2.045	0.773	1.105	0.775	1.684	1.193	0.905	1.252	0.76	0.738	0.961	0.315	1.624	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9206	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.956	0.074	0.001	0.447	0.072	0.029	0.037	0.004	0.015	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009457	1.000	1.000	Hsc_gene_20224.t1	Hsc_gene_20224.t1	—	O17695.1 Histone deacetylase 1 [Caenorhabditis elegans]	KAF7636185.1 Histone deacetylase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004407	GO:0008150_0.953\|GO:0003674_0.821\|GO:0005575_0.819\|GO:0110165_0.819\|GO:0009987_0.815\|GO:0005622_0.761\|GO:0016020_0.724\|GO:0043226_0.698\|GO:0043229_0.688\|GO:0043227_0.663\|GO:0043231_0.641\|GO:0065007_0.633\|GO:0071840_0.629\|GO:0016043_0.626\|GO:0050789_0.626\|GO:0005488_0.607\|GO:0005634_0.606\|GO:0008152_0.587\|GO:0050794_0.581\|GO:0005737_0.567\|GO:0043170_0.566\|GO:0006325_0.549\|GO:0044237_0.542\|GO:0009058_0.536\|GO:0044238_0.529\|GO:0003824_0.527\|GO:0005515_0.527\|GO:0044249_0.523\|GO:0009059_0.514\|GO:0032991_0.509\|GO:0010467_0.505\|GO:0019222_0.502\|GO:0031974_0.501\|GO:0043233_0.501	IPR000286+140-163_172-187_257-267+\|IPR003084+2-483_33-50_66-84_97-114_118-138_159-175_218-231_235-253+\|IPR023696+12-376+\|IPR023801+31-320+\|IPR037138+10-383+\|IPR050284+17-365+	—	PF00850+31-320+Histone_deacetylase_domain	G3DSA:3.40.800.20:FF:000001+10-387+Histone_deacetylase	PTHR10625+17-365+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	352-489	1.000	1-351	8vrt_C	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.529	55974.530	5.887	-7.000	30.061	14.315	50.102	49.898	15.337	14.724	48.262

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2644.707	3367.057	2726.683	2498.595	2196.070	1962.754	2105.185	2603.022	2951.532	2809.681	2870.474

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.534	-0.568	—	-0.218	-0.147	—	0.302	-0.164	—	—	—	—	—

No JSON data available for plots.

Back to Browser