SCN Proteipedia

Hg_chrom5_TN10mRNA_9790

Organism: Heterodera glycines Gene Locus: chr5:4557769-4559802 Feature type: polypeptide

Protein Sequence

Length: 488

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.62	1.287	1.118	0.777	1.434	1.261	0.585	1.537	1.23	1.523	0.869	2.29	1.708	0.433	1.422	0.995	0.672	0.621	0.158	0.603	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9207	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.546

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.823	0.225	0.003	0.421	0.083	0.087	0.083	0.006	0.033	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009458	1.000	1.000	Hsc_gene_20225.t1	Hsc_gene_20225.t1	—	O02334.2 DNA primase large subunit [Caenorhabditis elegans]	KAI1715079.1 eukaryotic and archaeal DNA primase, large subunit domain-containing protein [Ditylenchus destructor]	No	-0.080

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006269	GO:0008150_0.951\|GO:0009987_0.906\|GO:0005575_0.890\|GO:0110165_0.884\|GO:0005622_0.866\|GO:0008152_0.811\|GO:0016020_0.802\|GO:0043226_0.799\|GO:0044238_0.799\|GO:0043170_0.792\|GO:0043229_0.789\|GO:0044237_0.784\|GO:0009058_0.779\|GO:0044249_0.768\|GO:0009059_0.764\|GO:0043227_0.753\|GO:0006139_0.747\|GO:0043231_0.743\|GO:0090304_0.736\|GO:0034654_0.729\|GO:0016070_0.725\|GO:0141187_0.722\|GO:0032774_0.719\|GO:0006259_0.687\|GO:0071897_0.679\|GO:0006260_0.677\|GO:0005634_0.675\|GO:0006261_0.674\|GO:0006269_0.670\|GO:0032991_0.666\|GO:0043228_0.641\|GO:0043232_0.641\|GO:0031974_0.595\|GO:0043233_0.595\|GO:0070013_0.593\|GO:0031981_0.590\|GO:1902494_0.584\|GO:0140513_0.576\|GO:0005654_0.573\|GO:0140535_0.562\|GO:0005694_0.560\|GO:0061695_0.560\|GO:1990234_0.560\|GO:0000228_0.548\|GO:0000428_0.548\|GO:0030880_0.548\|GO:0055029_0.547\|GO:0032993_0.546\|GO:0000808_0.540\|GO:0000811_0.540\|GO:0005656_0.540\|GO:0005657_0.540\|GO:0005658_0.540\|GO:0008622_0.540\|GO:0030894_0.540\|GO:0031261_0.540\|GO:0033202_0.540\|GO:0036387_0.540\|GO:0042555_0.540\|GO:0042575_0.540\|GO:0043596_0.540\|GO:0043601_0.540\|GO:0071162_0.540\|GO:0097373_0.540\|GO:0006270_0.529	IPR007238+36-485_197-460+\|IPR016558+9-488_39-463+	—	PF04104+197-460+Eukaryotic_and_archaeal_DNA_primase,_large_subunit	—	PTHR10537+36-485+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	462-488	1.000	1-461	6dhw_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.538	56396.350	6.241	-2.500	30.533	11.475	52.049	47.951	15.779	14.754	41.598

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	lightcyan	1016.521	712.969	809.745	829.493	944.426	1004.104	1179.225	1014.915	963.080	1289.389	1149.542

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	0.144	0.155	—	0.242	—	0.359	—	—	—	—	—

No JSON data available for plots.

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