Hg_chrom5_TN10mRNA_9794
Organism: Heterodera glycines Gene Locus: chr5:4574066-4575205 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 1.107 | 1.154 | 0.182 | 1.058 | 1.221 | 1.008 | 0.529 | 1.881 | 1.716 | 1.363 | 1.245 | 0.735 | 0.305 | 1.188 | 0.983 | 0.52 | 0.641 | 1.628 | 0.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9211
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
6-26
|
0.964
|
— | — | — | — |
0.000
|
— | — |
0.285
|
0.266
|
0.011
|
0.502
|
0.368
|
0.336
|
0.624
|
0.225
|
0.348
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003867
|
2.000
|
1.000
|
Hsc_gene_20229.t1
|
Hsc_gene_20229.t1
|
— |
B5FYQ0.1 ADP-ribosylation factor-like protein 3 [Taeniopygia guttata]
|
KAI1717306.1 ADP-ribosylation factor family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.869|GO:0110165_0.868|GO:0005622_0.813|GO:0008150_0.760|GO:0005737_0.740|GO:0016020_0.733|GO:0043226_0.717|GO:0043229_0.687|GO:0009987_0.653|GO:0043227_0.648|GO:0071944_0.614|GO:0005886_0.613|GO:0003674_0.588|GO:0043231_0.557
|
IPR005225+17-136+|IPR006689+3-177_6-177_19-42_47-71_74-99_119-140+|IPR027417+15-179_18-183+|IPR044612+1-178+
|
SM00175+18-180+|SM00177+1-181+|SM00178+3-177+
|
PF00025+6-177+ADP-ribosylation_factor_family
|
G3DSA:3.40.50.300:FF:000281+18-182+ADP-ribosylation_factor-like_protein_3
|
PTHR45697+1-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-189
|
4zi3_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
21155.420
|
9.687
|
5.000
|
28.571
|
7.407
|
48.148
|
51.852
|
15.873
|
12.698
|
43.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
512.278
|
1413.609
|
1200.958
|
489.884
|
164.257
|
94.747
|
137.309
|
509.363
|
172.742
|
607.862
|
421.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.466
|
-1.666
|
-1.184
|
-1.608
|
-0.779
|
0.548
|
2.326
|
-1.748
|
— | — | — | — | — |
No JSON data available for plots.