Hg_chrom5_TN10mRNA_9797
Organism: Heterodera glycines Gene Locus: chr5:4584729-4585988 Feature type: polypeptideProtein Sequence
Length: 91
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.15 | 2.044 | 0.4 | 0.379 | 1.465 | 0.564 | 0.654 | 1.648 | 1.221 | 1.188 | 1.332 | 1.939 | 0.916 | 1.057 | 1.121 | 0.942 | 0.901 | 0.5 | 0.845 | 0.323 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9214
|
— | — |
0.778
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.544
|
0.273
|
0.020
|
0.671
|
0.117
|
0.040
|
0.077
|
0.014
|
0.091
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004096
|
1.000
|
2.000
|
Hsc_gene_10865.t1;Hsc_gene_12820.t3
|
— | — |
Q7ZUV0.1 Ankyrin repeat domain-containing protein 13C [Danio rerio]
|
XP_052274278.1 ankyrin repeat domain-containing protein 13C-like [Dreissena polymorpha]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.911|GO:0005575_0.838|GO:0009987_0.747|GO:0110165_0.746|GO:0065007_0.741|GO:0050789_0.734|GO:0050794_0.707|GO:0005622_0.677|GO:0043226_0.623|GO:0016020_0.619|GO:0043229_0.618|GO:0005737_0.596|GO:0043227_0.569|GO:0043231_0.562|GO:0003674_0.505|GO:0005488_0.505
|
IPR002110+32-61_32-64+|IPR036770+3-72_28-81+
|
SM00248+32-61+
|
PF00023+32-64+Ankyrin_repeat
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;67-91
|
1.000
|
3-66
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
10162.610
|
9.792
|
4.500
|
28.571
|
8.791
|
51.648
|
48.352
|
17.582
|
10.989
|
48.352
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
12.290
|
6.575
|
16.740
|
17.861
|
22.695
|
18.956
|
14.784
|
19.190
|
3.261
|
7.521
|
5.695
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.113
|
1.298
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.