Hg_chrom5_TN10mRNA_9801
Organism: Heterodera glycines Gene Locus: chr5:4593637-4596797 Feature type: polypeptideProtein Sequence
Length: 641
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 1.016 | 1.248 | 0.43 | 1.352 | 1.4 | 0.464 | 0.858 | 1.179 | 1.56 | 1.253 | 1.285 | 0.867 | 1.47 | 1.114 | 1.025 | 0.844 | 0.662 | 0.36 | 0.229 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9218
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKMETINEETLKKCKL,RKPLGDAFDAATNTKRKWV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.375
|
0.163
|
0.015
|
0.678
|
0.144
|
0.338
|
0.260
|
0.061
|
0.265
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009465
|
1.000
|
1.000
|
Hsc_gene_20234.t1
|
Hsc_gene_20234.t1
|
— |
Q9U2M8.3 Coiled-coil and C2 domain-containing protein 1-like [Caenorhabditis elegans]
|
KAF7636190.1 DM14 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001227
|
GO:0005575_0.944|GO:0110165_0.937|GO:0005622_0.911|GO:0043226_0.867|GO:0016020_0.866|GO:0043229_0.855|GO:0043227_0.806|GO:0043231_0.788|GO:0005737_0.655|GO:0008150_0.655|GO:0009987_0.617|GO:0065007_0.582|GO:0050789_0.561|GO:0003674_0.557|GO:0071944_0.556|GO:0005886_0.543|GO:0005488_0.542|GO:0050794_0.542
|
IPR000008+466-599_485-598_485-600+|IPR006608+216-277_322-380+|IPR035892+471-620_473-612+|IPR039725+7-289+
|
SM00239+485-598+|SM00685+216-277_322-380+
|
PF00168+485-600+C2_domain
|
— |
PTHR13076+7-289+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-229
|
1.000
|
230-641
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
71875.080
|
6.182
|
-2.500
|
30.421
|
6.084
|
52.574
|
47.426
|
15.445
|
14.977
|
47.582
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1404.984
|
1622.546
|
1600.912
|
1278.809
|
1301.188
|
1531.903
|
1988.796
|
2004.863
|
1212.936
|
988.720
|
1084.812
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.249
|
-0.480
|
-0.215
|
— |
0.250
|
0.386
|
0.284
|
— | — | — | — | — | — |
No JSON data available for plots.