SCN Proteipedia

Hg_chrom5_TN10mRNA_9802

Organism: Heterodera glycines Gene Locus: chr5:4596975-4600898 Feature type: polypeptide

Protein Sequence

Length: 918

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.709	0.861	1.109	0.413	1.398	1.006	0.7	1.035	1.428	1.31	1.271	1.666	0.878	0.943	1.112	0.763	0.875	1.188	0.503	0.769	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9219	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	RKKR,KRLEMFVSAHRRIRL	—	—	7-45	0.916	—	—	0.000	—	—	0.162	0.947	0.033	0.196	0.098	0.082	0.075	0.048	0.032	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009466	1.000	1.000	Hsc_gene_20235.t1	Hsc_gene_20235.t1	—	O44952.1 Lon protease homolog, mitochondrial [Caenorhabditis elegans]	KAH7727604.1 ATP-dependent protease La family protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004176\|GO:0004252\|GO:0005524\|GO:0006508\|GO:0016887\|GO:0030163	GO:0005575_0.876\|GO:0110165_0.873\|GO:0005622_0.841\|GO:0008150_0.805\|GO:0043226_0.766\|GO:0016020_0.762\|GO:0005737_0.758\|GO:0043229_0.741\|GO:0043227_0.689\|GO:0043231_0.654\|GO:0009987_0.600\|GO:0008152_0.595\|GO:0044238_0.582\|GO:0043170_0.563\|GO:0003674_0.547	IPR003111+77-320_78-322+\|IPR003593+467-613+\|IPR003959+471-610+\|IPR004815+66-212_79-917_212-918+\|IPR008268+822-830+\|IPR008269+695-916_717-918+\|IPR014721+711-918+\|IPR015947+76-178+\|IPR020568+720-916+\|IPR027065+73-918+\|IPR027417+423-681_432-611+\|IPR046336+74-184+	SM00382+467-613+\|SM00464+77-320+	PF00004+471-610+ATPase_family_associated_with_various_cellular_activities_(AAA)\|PF02190+77-320+ATP-dependent_protease_La_(LON)_substrate-binding_domain\|PF05362+695-916+Lon_protease_(S16)_C-terminal_proteolytic_domain\|PF22667+634-684+Lon_protease_AAA+_ATPase_lid_domain	G3DSA:1.20.5.5270:FF:000001+372-420+Lon_protease_homolog,_mitochondrial\|G3DSA:3.30.230.10:FF:000015+711-918+Lon_protease_homolog,_mitochondrial\|G3DSA:3.40.50.300:FF:000021+432-611+Lon_protease_homolog	PTHR43718+73-918+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	180-226	2.000	1-179;227-918	7krz_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.565	103566.310	6.815	3.500	30.392	8.497	48.693	51.307	15.904	14.488	46.405

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	saddlebrown	4710.465	4339.868	3586.014	5947.061	6443.584	5516.318	3886.863	3720.031	5210.384	4160.595	4610.505

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.505	0.318	0.838	0.084	-0.209	-0.495	-0.673	0.206	—	—	—	—	—

No JSON data available for plots.

Back to Browser