Hg_chrom5_TN10mRNA_9804
Organism: Heterodera glycines Gene Locus: chr5:4606620-4609440 Feature type: polypeptideProtein Sequence
Length: 648
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 1.579 | 0.673 | 0.639 | 0.746 | 1.662 | 1.01 | 0.849 | 1.406 | 0.709 | 1.005 | 1.634 | 1.157 | 1.395 | 0.724 | 0.992 | 1.341 | 1.052 | 0.594 | 0.408 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9221
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.602
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.208
|
0.132
|
0.090
|
0.172
|
0.055
|
0.032
|
0.065
|
0.026
|
0.156
|
0.910
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002210
|
2.000
|
2.000
|
Hsc_gene_14280.t1;Hsc_gene_20237.t1
|
Hsc_gene_20237.t1
|
— |
Q21388.2 Zinc metalloproteinase nas-10 [Caenorhabditis elegans]
|
KAF7636192.1 Metalloendopeptidase, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.759|GO:0005575_0.678|GO:0110165_0.670|GO:0003674_0.620
|
IPR001506+379-586_391-586_413-431_472-490_491-508_530-545_572-585+|IPR003582+588-631_589-630+|IPR006026+387-535+|IPR024079+332-587+|IPR034035+397-584+
|
SM00235+387-535+|SM00254+588-631+
|
PF01400+391-586+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+324-611+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-238;289-332
|
2.000
|
239-288;333-648
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
70353.030
|
9.196
|
18.500
|
20.062
|
8.025
|
48.457
|
51.543
|
11.883
|
8.179
|
56.481
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
977.832
|
131.410
|
953.471
|
243.118
|
1248.318
|
1559.867
|
558.409
|
1438.578
|
19.954
|
1963.111
|
1130.329
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.630
|
0.750
|
-1.863
|
2.329
|
0.337
|
-1.473
|
— |
-1.226
|
-6.740
|
— | — | — | — |
No JSON data available for plots.