SCN Proteipedia

Hg_chrom5_TN10mRNA_9806

Organism: Heterodera glycines Gene Locus: chr5:4613433-4615370 Feature type: polypeptide

Protein Sequence

Length: 414

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.18	0.786	0.834	0.666	1.208	0.929	0.863	0.725	1.557	1.142	1.061	1.279	1.476	0.65	0.838	1.001	0.752	1.208	0.372	0.853	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9223	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	0.986

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.066	0.861	0.008	0.079	0.029	0.079	0.051	0.119	0.082	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009469	1.000	1.000	Hsc_gene_20240.t1	Hsc_gene_20240.t1	—	Q9DBL1.1 Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial [Mus musculus]	KAI1730555.1 acyl-CoA dehydrogenase, middle domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003995\|GO:0016627\|GO:0050660	GO:0005575_0.756\|GO:0110165_0.747\|GO:0003674_0.717\|GO:0005622_0.676\|GO:0005737_0.672\|GO:0008150_0.672\|GO:0016020_0.643\|GO:0003824_0.630\|GO:0009987_0.604\|GO:0043226_0.580\|GO:0043229_0.558\|GO:0043227_0.541\|GO:0016491_0.536\|GO:0043231_0.526\|GO:0016627_0.508	IPR006089+155-167_367-386+\|IPR006091+153-248+\|IPR009075+260-407+\|IPR009100+36-272+\|IPR013786+38-148+\|IPR036250+258-408+\|IPR037069+31-148+\|IPR046373+152-264+	—	PF00441+260-407+Acyl-CoA_dehydrogenase,_C-terminal_domain\|PF02770+153-248+Acyl-CoA_dehydrogenase,_middle_domain\|PF02771+38-148+Acyl-CoA_dehydrogenase,_N-terminal_domain	G3DSA:1.10.540.10:FF:000012+27-150+Acyl-CoA_dehydrogenase_short/branched_chain\|G3DSA:1.20.140.10:FF:000002+265-412+Acyl-CoA_dehydrogenase_short/branched_chain\|G3DSA:2.40.110.10:FF:000001+152-264+Acyl-CoA_dehydrogenase,_mitochondrial	PTHR43884+35-413+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-414	2jif_D	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.605	45383.270	6.498	0.000	24.396	10.145	42.995	57.005	12.560	11.836	50.242

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	grey60	1867.826	1285.037	1653.199	1429.641	1719.950	1840.749	2381.802	2404.100	2554.560	1487.889	1945.034

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.134	—	—	0.234	—	0.382	—	—	—	—	—	—	—

No JSON data available for plots.

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