Hg_chrom5_TN10mRNA_9808
Organism: Heterodera glycines Gene Locus: chr5:4620329-4623377 Feature type: polypeptideProtein Sequence
Length: 501
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.975 | 1.114 | 0.363 | 0.826 | 0.765 | 0.972 | 0.57 | 0.998 | 1.375 | 1.672 | 0.484 | 1.409 | 1.719 | 0.768 | 1.589 | 1.426 | 0.785 | 0.907 | 1.075 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9225
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.530
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRATELGKAEGEERKERLR
|
46-116
|
0.977
|
97-118
|
0.999
|
— | — |
0.000
|
— | — |
0.037
|
0.099
|
0.018
|
0.096
|
0.482
|
0.230
|
0.214
|
0.051
|
0.749
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009470
|
1.000
|
1.000
|
Hsc_gene_20241.t1
|
Hsc_gene_20241.t1
|
— | — |
KAI1711241.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0003674_0.847|GO:0005575_0.662|GO:0110165_0.661|GO:0016020_0.624|GO:0008150_0.610|GO:0009987_0.576|GO:0065007_0.519
|
IPR000276+166-414_215-237_310-333_357-381_396-422+|IPR017452+142-414+|IPR052954+155-444+
|
— |
PF00001+166-414+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR46641+155-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
444-501
|
1.000
|
1-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
56525.750
|
10.030
|
27.000
|
19.561
|
12.575
|
42.914
|
57.086
|
12.974
|
6.587
|
47.106
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
650.058
|
132.705
|
449.963
|
277.362
|
283.418
|
156.831
|
321.256
|
254.065
|
456.947
|
1797.944
|
1223.231
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.532
|
0.927
|
-0.589
|
— |
-0.839
|
1.046
|
0.588
|
0.483
|
— | — |
-2.436
|
— | — |
No JSON data available for plots.