Hg_chrom5_TN10mRNA_9813
Organism: Heterodera glycines Gene Locus: chr5:4639098-4642020 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 0.71 | 0.741 | 0.351 | 0.543 | 1.984 | 3.297 | 0.509 | 0.362 | 0.165 | 0.278 | 1.198 | 1.471 | 1.997 | 1.663 | 0.727 | 0.467 | 0.463 | 0.627 | 0.899 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9230
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
TPGGGRSRGDGGRGRGGMGARGDRGGRGGGGGGRGRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.854
|
0.137
|
0.010
|
0.533
|
0.161
|
0.048
|
0.041
|
0.000
|
0.057
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009473
|
1.000
|
1.000
|
Hsc_gene_20245.t1
|
Hsc_gene_20245.t1
|
— | — |
KAF7636177.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0006355
|
GO:0003674_0.877|GO:0005575_0.836|GO:0110165_0.827|GO:0005488_0.805|GO:0003676_0.764|GO:0003723_0.764|GO:0097159_0.764|GO:0005622_0.716|GO:0008150_0.681|GO:0016020_0.660|GO:0043226_0.659|GO:0043229_0.648|GO:0043227_0.615|GO:0043231_0.612|GO:0005634_0.559|GO:0009987_0.558|GO:0008152_0.503
|
IPR000504+229-315_230-311_231-304+|IPR001876+420-448_422-445+|IPR012677+211-353+|IPR034870+194-481+|IPR035979+224-330+|IPR036443+411-447+
|
SM00360+230-311+|SM00547+422-445+
|
PF00076+231-304+RNA_recognition_motif
|
— |
PTHR23238+194-481+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-491
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
49620.890
|
9.926
|
15.500
|
18.330
|
10.183
|
37.067
|
62.933
|
10.998
|
7.332
|
63.951
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
2357.817
|
4005.767
|
3473.423
|
3738.671
|
3547.443
|
3061.135
|
1893.943
|
2058.425
|
1709.102
|
866.570
|
1227.655
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.435
|
-0.237
|
0.215
|
-0.108
|
-0.198
|
-0.684
|
-0.677
|
— | — | — | — | — | — |
No JSON data available for plots.