Hg_chrom5_TN10mRNA_9814
Organism: Heterodera glycines Gene Locus: chr5:4642290-4642724 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.524 | 0.419 | 0.819 | 0.311 | 2.703 | 1.386 | 0.644 | 0.45 | 0.601 | 1.096 | 1.365 | 2.12 | 0.751 | 0.347 | 2.022 | 1.158 | 0.295 | 1.365 | 1.386 | 0.53 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9231
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.405
|
0.273
|
0.032
|
0.608
|
0.043
|
0.076
|
0.083
|
0.012
|
0.130
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009474
|
1.000
|
1.000
|
Hsc_gene_20246.t1
|
Hsc_gene_20246.t1
|
— |
B2RYZ5.1 Transcription and mRNA export factor ENY2 [Xenopus tropicalis]
|
KAI1723373.1 transcription factor e(y)2 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.640
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000124|GO:0003713|GO:0005643|GO:0006406|GO:0045893
|
GO:0005575_0.928|GO:0110165_0.928|GO:0008150_0.911|GO:0005622_0.877|GO:0009987_0.863|GO:0065007_0.857|GO:0050789_0.845|GO:0043226_0.826|GO:0016020_0.821|GO:0050794_0.818|GO:0003674_0.815|GO:0005488_0.815|GO:0043229_0.805|GO:0005515_0.787|GO:0005737_0.787|GO:0043227_0.747|GO:0048518_0.746|GO:0008152_0.740|GO:0009058_0.740|GO:0009059_0.740|GO:0010467_0.740|GO:0043170_0.740|GO:0044237_0.740|GO:0044249_0.740|GO:0048522_0.731|GO:0051179_0.731|GO:0043231_0.729|GO:0019222_0.727|GO:0044238_0.726|GO:0006139_0.721|GO:0051234_0.721|GO:0060255_0.721|GO:0080090_0.721|GO:0006810_0.719|GO:0031323_0.719|GO:0032991_0.716|GO:0034654_0.712|GO:0051641_0.711|GO:0090304_0.709|GO:0009889_0.707|GO:0016070_0.707|GO:0031326_0.706|GO:0009893_0.705|GO:0032774_0.705|GO:0141187_0.705|GO:0010556_0.704|GO:0010468_0.703|GO:0051649_0.699|GO:0031325_0.698|GO:0010604_0.697|GO:0009891_0.695|GO:0019219_0.693|GO:0031328_0.692|GO:0006351_0.691|GO:0033036_0.691|GO:0010557_0.690|GO:0051252_0.690|GO:0006355_0.688|GO:2001141_0.688|GO:0071705_0.686|GO:0046907_0.685|GO:0045935_0.682|GO:0051254_0.680|GO:0006366_0.678|GO:0045893_0.678|GO:1902680_0.678|GO:0006357_0.677|GO:0006403_0.670|GO:0006405_0.670|GO:0006406_0.670|GO:0006913_0.670|GO:0015931_0.670|GO:0016973_0.670|GO:0050657_0.670|GO:0050658_0.670|GO:0051028_0.670|GO:0051168_0.670|GO:0051169_0.670|GO:0051236_0.670|GO:0043228_0.669|GO:0043232_0.669|GO:0071944_0.669|GO:0005886_0.666|GO:0060090_0.655|GO:0030674_0.654|GO:0140110_0.654|GO:0003712_0.650|GO:0003713_0.650|GO:0030374_0.650|GO:0005634_0.637|GO:0031974_0.590|GO:0043233_0.590|GO:0070013_0.588|GO:0005773_0.583|GO:0031981_0.580|GO:0012505_0.579|GO:1902494_0.572|GO:0031967_0.569|GO:0005654_0.564|GO:0005739_0.563|GO:0140513_0.559|GO:0140535_0.558|GO:1990234_0.551|GO:0005694_0.550|GO:1905368_0.547|GO:0000785_0.546|GO:0000123_0.540|GO:0000124_0.540|GO:0005635_0.540|GO:0005643_0.540|GO:0031248_0.540|GO:0044615_0.540|GO:0070390_0.540|GO:0070461_0.540|GO:0071819_0.540|GO:1902493_0.540
|
IPR018783+14-103_17-104_19-101+|IPR038212+12-106+
|
— |
PF10163+19-101+Transcription_factor_e(y)2
|
— |
PTHR12514+14-103+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
13046.780
|
5.378
|
-1.500
|
40.541
|
7.207
|
57.658
|
42.342
|
19.820
|
20.721
|
37.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1561.730
|
1504.425
|
2042.362
|
1276.773
|
1152.236
|
1002.229
|
1145.305
|
1341.569
|
2531.546
|
1384.572
|
1876.132
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.210
|
-0.374
|
-0.568
|
-0.180
|
-0.186
|
0.204
|
0.317
|
— | — | — | — | — | — |
No JSON data available for plots.