Hg_chrom5_TN10mRNA_9817
Organism: Heterodera glycines Gene Locus: chr5:4647135-4649222 Feature type: polypeptideProtein Sequence
Length: 475
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.49 | 1.371 | 1.263 | 0.799 | 1.649 | 1.026 | 0.401 | 1.474 | 1.029 | 1.337 | 0.702 | 1.858 | 2.339 | 0.526 | 1.031 | 0.962 | 0.863 | 0.893 | 0.486 | 0.991 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9234
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.373
|
0.195
|
0.005
|
0.519
|
0.319
|
0.305
|
0.193
|
0.008
|
0.320
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009477
|
1.000
|
1.000
|
Hsc_gene_20249.t1
|
Hsc_gene_20249.t1
|
— |
Q969Q6.1 Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma [Homo sapiens]
|
KAI1707555.1 EF-hand domain pair domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0035303
|
GO:0005575_0.858|GO:0008150_0.831|GO:0009987_0.779|GO:0110165_0.736|GO:0005622_0.673|GO:0043226_0.608|GO:0043229_0.600|GO:0016020_0.599|GO:0005737_0.592|GO:0065007_0.566|GO:0050789_0.553|GO:0043227_0.540|GO:0050794_0.535|GO:0043231_0.518
|
IPR002048+257-292_264-284_326-361_334-354+|IPR011992+252-407+|IPR018247+339-351+|IPR039865+27-428+
|
— |
PF13202+264-284_334-354+EF_hand
|
— |
PTHR12085+27-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6
|
1.000
|
7-475
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
55655.760
|
4.499
|
-27.000
|
29.474
|
15.368
|
51.368
|
48.632
|
12.632
|
16.842
|
43.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey60
|
1124.405
|
883.322
|
850.767
|
923.010
|
1074.006
|
977.258
|
2092.067
|
1057.147
|
967.033
|
1247.407
|
1127.247
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.284
|
— |
0.227
|
0.186
|
— |
1.109
|
— |
1.127
|
— | — | — | — | — |
No JSON data available for plots.