Hg_chrom5_TN10mRNA_9818
Organism: Heterodera glycines Gene Locus: chr5:4650408-4651219 Feature type: polypeptideProtein Sequence
Length: 187
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 0.746 | 0.583 | 1.291 | 1.337 | 1.371 | 0.828 | 1.872 | 0.713 | 0.795 | 0.81 | 2.202 | 2.08 | 1.337 | 1.528 | 0.306 | 0.789 | 1.134 | 1.645 | 0.944 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9235
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.049
|
0.972
|
0.011
|
0.113
|
0.024
|
0.016
|
0.033
|
0.008
|
0.254
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009478
|
1.000
|
1.000
|
Hsc_gene_20250.t1
|
Hsc_gene_20250.t1
|
— |
Q9N361.1 Small ribosomal subunit protein mS25 [Caenorhabditis elegans]
|
KHN75022.1 putative 28S ribosomal protein S25, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005739
|
GO:0005575_0.878|GO:0110165_0.867|GO:0005622_0.775|GO:0016020_0.748|GO:0005737_0.742|GO:0043226_0.712|GO:0043229_0.689|GO:0043227_0.687|GO:0043231_0.666|GO:0008150_0.614|GO:0005739_0.555|GO:0009987_0.547
|
IPR007741+42-113_48-98+|IPR036249+45-108+|IPR040049+6-169+
|
SM00916+42-113+
|
PF05047+48-98+Mitochondrial_ribosomal_protein_L51_/_S25_/_CI-B8_domain
|
— |
PTHR13274+6-169+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
181-187
|
1.000
|
1-180
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
21820.150
|
8.170
|
6.500
|
27.807
|
16.578
|
43.316
|
56.684
|
16.578
|
11.230
|
44.385
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
985.029
|
846.849
|
724.545
|
929.685
|
1081.238
|
793.778
|
768.376
|
809.730
|
726.108
|
1532.097
|
1186.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.456
|
— |
0.469
|
0.185
|
-0.431
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.