Hg_chrom5_TN10mRNA_9820
Organism: Heterodera glycines Gene Locus: chr5:4651716-4654768 Feature type: polypeptideProtein Sequence
Length: 386
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 0.904 | 0.612 | 0.536 | 1.468 | 1.661 | 0.679 | 1.166 | 1.612 | 0.98 | 1.609 | 2.286 | 0.936 | 0.498 | 2.009 | 0.592 | 0.977 | 0.589 | 0.199 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9237
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RAIKRVR,KREKQRDGIIQKRTKRK.,RKWIGGAEKGQNATEKRLR,KRLRIRSKGKRREAKKRLT,KRPTAEFASKQHQKSGKKK,KRVRNGPDDIDFKRAKREK,KRAKREKQRDGIIQKRTKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.917
|
0.077
|
0.010
|
0.186
|
0.053
|
0.021
|
0.065
|
0.006
|
0.058
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009479
|
1.000
|
1.000
|
Hsc_gene_20251.t1
|
Hsc_gene_20251.t1
|
— |
Q96GQ7.2 Probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
|
KAH7728524.1 DEAD box protein box polypeptide 27 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.899|GO:0110165_0.898|GO:0005622_0.853|GO:0043226_0.744|GO:0043229_0.741|GO:0016020_0.736|GO:0008150_0.709|GO:0043227_0.645|GO:0043231_0.638|GO:0009987_0.622|GO:0003674_0.607|GO:0008152_0.550|GO:0044238_0.550|GO:0005634_0.549|GO:0043170_0.539
|
IPR001650+59-244_81-184_102-184+|IPR027417+1-54_2-202_55-283+|IPR050079+1-376+
|
SM00490+102-184+
|
PF00271+81-184+Helicase_conserved_C-terminal_domain
|
— |
PTHR47959+1-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
241-386
|
1.000
|
1-240
|
7oi6_x
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
44483.640
|
10.817
|
36.500
|
34.974
|
6.995
|
55.440
|
44.560
|
22.798
|
12.176
|
38.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1771.216
|
2557.130
|
1679.459
|
1518.505
|
1745.274
|
1612.929
|
1204.997
|
1795.946
|
3210.635
|
798.253
|
1832.131
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.836
|
-0.889
|
— |
0.169
|
— |
-0.410
|
— |
-0.433
|
1.899
|
— | — | — | — |
No JSON data available for plots.